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BaseInfo

ncRNA ID	gra-miR8667
Species	Gossypium raimondii
Class	miRNA
Genome position	chr9:16980390-16980543 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - UUUCCAAUAGUUUUAUGCCACAUC - 34
Stem-loop(if miRNA)	UUGUACCCA                  C    U   CAU                  --CAUA   AACCUGAAAAA          UUUUCCAAUAGUUUUAUG CACA CAG   UUUUAUCUUGAAUUUUAG      UUC           A          |||||||||||||||||| |||| |||   ||||||||||||||||||      |||          GAAAGGUUAUCAAAAUAC GUGU GUC   AAAGUAGGACUUAAAAUC      UUA           A UAUAAUAGA                  A    U   AUU                  CUAAAA   AACCUAAACUA
Stem-loop sequence	UUGUACCCAUUUUCCAAUAGUUUUAUGCCACAUCAGCAUUUUUAUCUUGAAUUUUAGCAUAUUCAACCUGAAAAAAAAUCAAAUCCAAAUUAAAAUCCUAAAAUUCAGGAUGAAAUUACUGUUGUGACAUAAAACUAUUGGAAAGAGAUAAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012620185.1	ncRNA:24   CUAC-ACCGUAUUUUGAUAACCUUU   1   *|||-||||||=||||*|||||||| targets:942   AAUGAUGGCAUGAAACGAUUGGAAA   966 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii anthranilate synthase alpha subunit 2, chloroplastic-like (LOC105791884), transcript variant X2, mRNA	anthranilate synthase alpha subunit 2, chloroplastic-like(LOC105791884)	coding protein	psRNATarget
XM_012620177.1	ncRNA:24   CUAC-ACCGUAUUUUGAUAACCUUU   1   *|||-||||||=||||*|||||||| targets:949   AAUGAUGGCAUGAAACGAUUGGAAA   973 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii anthranilate synthase alpha subunit 2, chloroplastic-like (LOC105791884), transcript variant X1, mRNA	anthranilate synthase alpha subunit 2, chloroplastic-like(LOC105791884)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).