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BaseInfo

ncRNA ID gra-miR167b
Species Gossypium raimondii
Class miRNA
Genome position chr9:11531311-11531645 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 305 - UCAGAUCAUCUUGCAGCUUCA - 325
Stem-loop(if miRNA) UU    A            C  C           --       --     AUCAC   UUUUU  -- UUUUGUAUUCUUAGGCCUCUUUUAUAGUUUUUGUACAGGUAUGUUAAGUUAGAUUGUUUAUGACCGGUUUUAGAUCAAAAUUCUUUUGAGUCCAAGAUGAGUUU
  UGAG GGUUGAAGCUGC AG AUGAUCUGGUA  AUGGGCC  UAGCU     CCU     UA  U                                                                                                        U
  |||| |||||||||||| || |||||||||||  |||||||  |||||     |||     ||  |                                                                                                        U
  ACUC CUAACUUCGACG UC UACUAGACUAU  UACUUGG  GUUGG     UCG     AA  C                                                                                                        U
UC    A            U  -           CA       CU     AUACU   -----  UU AUGUCCGUCCCAAGAAAUAUUUGUGUAGAUUCAACGGACCAUUAGAUUCUGAGAUUUUCGGGAAUUGGUUUACUAACUAUUUGAAGAGGACUUUCUUUCUUUCU
Stem-loop sequence UUUGAGAGGUUGAAGCUGCCAGCAUGAUCUGGUAAUGGGCCUAGCUAUCACCCUUUUUUUAUUUUUGUAUUCUUAGGCCUCUUUUAUAGUUUUUGUACAGGUAUGUUAAGUUAGAUUGUUUAUGACCGGUUUUAGAUCAAAAUUCUUUUGAGUCCAAGAUGAGUUUUUUUCUUUCUUUCUUUCAGGAGAAGUUUAUCAAUCAUUUGGUUAAGGGCUUUUAGAGUCUUAGAUUACCAGGCAACUUAGAUGUGUUUAUAAAGAACCCUGCCUGUACUUAAGCUUCAUAGGUUGUCGGUUCAUACUAUCAGAUCAUCUUGCAGCUUCAAUCACUCACU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).