ncRNA ID | gra-miR167b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr9:11531311-11531645 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 305 - UCAGAUCAUCUUGCAGCUUCA - 325 |
Stem-loop(if miRNA) |
UU    A            C  C           --       --     AUCAC   UUUUU  -- UUUUGUAUUCUUAGGCCUCUUUUAUAGUUUUUGUACAGGUAUGUUAAGUUAGAUUGUUUAUGACCGGUUUUAGAUCAAAAUUCUUUUGAGUCCAAGAUGAGUUU   UGAG GGUUGAAGCUGC AG AUGAUCUGGUA  AUGGGCC  UAGCU     CCU     UA  U                                                                                                        U   |||| |||||||||||| || |||||||||||  |||||||  |||||     |||     ||  |                                                                                                        U   ACUC CUAACUUCGACG UC UACUAGACUAU  UACUUGG  GUUGG     UCG     AA  C                                                                                                        U UC    A            U  -           CA       CU     AUACU   -----  UU AUGUCCGUCCCAAGAAAUAUUUGUGUAGAUUCAACGGACCAUUAGAUUCUGAGAUUUUCGGGAAUUGGUUUACUAACUAUUUGAAGAGGACUUUCUUUCUUUCU |
Stem-loop sequence | UUUGAGAGGUUGAAGCUGCCAGCAUGAUCUGGUAAUGGGCCUAGCUAUCACCCUUUUUUUAUUUUUGUAUUCUUAGGCCUCUUUUAUAGUUUUUGUACAGGUAUGUUAAGUUAGAUUGUUUAUGACCGGUUUUAGAUCAAAAUUCUUUUGAGUCCAAGAUGAGUUUUUUUCUUUCUUUCUUUCAGGAGAAGUUUAUCAAUCAUUUGGUUAAGGGCUUUUAGAGUCUUAGAUUACCAGGCAACUUAGAUGUGUUUAUAAAGAACCCUGCCUGUACUUAAGCUUCAUAGGUUGUCGGUUCAUACUAUCAGAUCAUCUUGCAGCUUCAAUCACUCACU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |