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BaseInfo

ncRNA ID	gra-miR530b
Species	Gossypium raimondii
Class	miRNA
Genome position	chr9:8086491-8086636 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	116 - AGGUGCAGGUGCAGGCGCAGC - 136
Stem-loop(if miRNA)	GCA  C    U    A                ---C        ---AAUUA   GC     -C    GA   - A    GC UUUA CUGC UUUGCACCUGCACCUU    UUGUUUUU        UCU  UUCUG  UUCA  AAC C A    || |||| |||| ||||||||||||||||    ||||||||        |||  |||||  ||||  ||| |    CG AAGU GACG GGACGUGGACGUGGAA    AAUAAAAG        AGG  AAGAU  AAGU  UUG G A UAC  U    C    C                UAAU        ACAAAGCC   AU     AA    AG   U U
Stem-loop sequence	GCAGCCUUUAUCUGCAUUUGCACCUGCACCUUCUUGUUUUUAAUUAUCUGCUUCUGCUUCAGAAACCAAAUGUGUUGAUGAAAAUAGAAUAGGACCGAAACAGAAAAUAAUAAUAAGGUGCAGGUGCAGGCGCAGCUGAAUGCCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012606669.1	ncRNA:21   CGACGCGGACGUGGACGUGGA   1   *||||*||||||||||||||* targets:147   UCUGCACCUGCACCUGCACCA   167 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii zinc finger CCCH domain-containing protein 46-like (LOC105782145), transcript variant X1, mRNA	zinc finger CCCH domain-containing protein 46-like(LOC105782145)	coding protein	psRNATarget
XM_012606670.1	ncRNA:21   CGACGCGGACGUGGACGUGGA   1   *||||*||||||||||||||* targets:134   UCUGCACCUGCACCUGCACCA   154 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii zinc finger CCCH domain-containing protein 46-like (LOC105782145), transcript variant X2, mRNA	zinc finger CCCH domain-containing protein 46-like(LOC105782145)	coding protein	psRNATarget
XM_012630629.1	ncRNA:21   CGACGCGGACGUGGACGUGGA   1   *||||*||||||||||||=|| targets:743   CCUGCUCCUGCACCUGCAUCU   763 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii WD repeat-containing protein 44 (LOC105799854), mRNA	WD repeat-containing protein 44(LOC105799854)	coding protein	psRNATarget
XM_012625412.1	ncRNA:21   CGACGCGGACGUGGACGUGGA   1   *||||*|||||*||||||||| targets:76   CCUGCUCCUGCUCCUGCACCU   96 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105795749 (LOC105795749), mRNA	uncharacterized LOC105795749(LOC105795749)	coding protein	psRNATarget
XM_012596787.1	ncRNA:21   CGACGCGGACGUGGACGUGGA   1   *|||*||||||||||*||||| targets:2620   ACUGAGCCUGCACCUCCACCU   2640 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like (LOC105774329), transcript variant X1, mRNA	protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like(LOC105774329)	coding protein	psRNATarget
XM_012596788.1	ncRNA:21   CGACGCGGACGUGGACGUGGA   1   *|||*||||||||||*||||| targets:2700   ACUGAGCCUGCACCUCCACCU   2720 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like (LOC105774329), transcript variant X2, mRNA	protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like(LOC105774329)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).