ncRNA ID | gra-miR8657d |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr9:6849844-6850050 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 174 - UGUAGUAAUUGUAGAAGUUCAGGG - 197 |
Stem-loop(if miRNA) |
U   C          U             CA   ACU   C   ------------------------------UAUUUUUCCUUUUUCA    U   UACGGGAUCUUGAUCUAAAA  GGA UGAAUUGUAG AAUUGUAGAAGUU  GGG   AUU UGU                                              UAAG UUC                    U  ||| |||||||||| |||||||||||||  |||   ||| |||                                              |||| |||                    A  CCU AUUUAACGUU UUAACAUUUUCAA  CCC   UAA ACA                                              UUUA UAU                    U U   A          U             AA   -AU   C   UUUAAUUUUUUAUUUUCCCAUUAUUAACACUUUACUUAAUCUUCAC    -   ACGAUUACUUACUUAUAAAA |
Stem-loop sequence | UGGACUGAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUCUGUUAUUUUUCCUUUUUCAUAAGUUUCUACGGGAUCUUGAUCUAAAAUAUAAAAUAUUCAUUCAUUAGCAUAUAUUUCACUUCUAAUUCAUUUCACAAUUAUUACCCUUUUAUUUUUUAAUUUACACAAUUACCCAAAACUUUUACAAUUUUUGCAAUUUAAUCCU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |