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BaseInfo

ncRNA ID gra-miR8657d
Species Gossypium raimondii
Class miRNA
Genome position chr9:6849844-6850050 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 174 - UGUAGUAAUUGUAGAAGUUCAGGG - 197
Stem-loop(if miRNA) U   C          U             CA   ACU   C   ------------------------------UAUUUUUCCUUUUUCA    U   UACGGGAUCUUGAUCUAAAA
 GGA UGAAUUGUAG AAUUGUAGAAGUU  GGG   AUU UGU                                              UAAG UUC                    U
 ||| |||||||||| |||||||||||||  |||   ||| |||                                              |||| |||                    A
 CCU AUUUAACGUU UUAACAUUUUCAA  CCC   UAA ACA                                              UUUA UAU                    U
U   A          U             AA   -AU   C   UUUAAUUUUUUAUUUUCCCAUUAUUAACACUUUACUUAAUCUUCAC    -   ACGAUUACUUACUUAUAAAA
Stem-loop sequence UGGACUGAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUCUGUUAUUUUUCCUUUUUCAUAAGUUUCUACGGGAUCUUGAUCUAAAAUAUAAAAUAUUCAUUCAUUAGCAUAUAUUUCACUUCUAAUUCAUUUCACAAUUAUUACCCUUUUAUUUUUUAAUUUACACAAUUACCCAAAACUUUUACAAUUUUUGCAAUUUAAUCCU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).