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BaseInfo

ncRNA ID	gra-miR7584e
Species	Gossypium raimondii
Class	miRNA
Genome position	chr9:746856-747159 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	274 - AGGAGUUAGAUUGUAUUUUAU - 294
Stem-loop(if miRNA)	A  C                         AUCC A    CACA          C     G      CUA        AAA              UUUCAAU       UUCAUACAUUUUUGCUAUUAAAAAUUGGUUUUUGUACCUUAAAAUG  CU UGUAUUAGGAGUUAGAUUGUAUUUU    C UUUA    AAAAAAUAGG AAAUU AUUUUU   CGUUAGAU   AAAGUAAAUUGAUC       UAAAAAU                                              A  || |||||||||||||||||||||||||    | ||||    |||||||||| ||||| ||||||   ||||||||   ||||||||||||||       |||||||                                              G  GA AUAUGAUUUUCAAUUUAACAUAAAA    G AAAU    UUUUUUAUUU UUUAA UAGAAA   GCAAUCUA   UUUUGUUUAACUAG       GAUAAUU                                              A G  A                         AAAA C    ---A          A     A      -AA        GAG              ---UAAA       UUUAACCGUAUUAUCUAUUUUAUUGAUCUAUCAAUGUGCGUUACAC
Stem-loop sequence	ACUCUGUAUUAGGAGUUAGAUUGUAUUUUAUCCCAUUUACACAAAAAAAUAGGCAAAUUGAUUUUUCUACGUUAGAUAAAAAAGUAAAUUGAUCUUUCAAUUAAAAAUUUCAUACAUUUUUGCUAUUAAAAAUUGGUUUUUGUACCUUAAAAUGAGACACAUUGCGUGUAACUAUCUAGUUAUUUUAUCUAUUAUGCCAAUUUUUAAUAGAAAUGAUCAAUUUGUUUUGAGAUCUAACGAAAAAGAUAAAUUUAUUUAUUUUUUAUAAACGAAAAAAAAUACAAUUUAACUUUUAGUAUAAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012605192.1	ncRNA:21   UAUUUUAUGUUAGAUUGAGGA   1   |||||||=||||||||||||| targets:978   AUAAAAUGCAAUCUAACUCCU   998 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii nudix hydrolase 25 (LOC105780712), mRNA	nudix hydrolase 25(LOC105780712)	coding protein	psRNATarget
XM_012625086.1	ncRNA:21   UAUUUUAUGUUAGAUUGAGGA   1   =|||||||||||||||=|||| targets:961   GUAAAAUACAAUCUAAUUCCU   981 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105795455 (LOC105795455), mRNA	uncharacterized LOC105795455(LOC105795455)	coding protein	psRNATarget
XM_012628156.1	ncRNA:21   UAUUUUAUGUUAGAUUGAGGA   1   =||||||||||||||||||=| targets:2443   GUAAAAUACAAUCUAACUCUU   2463 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X3, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012628155.1	ncRNA:21   UAUUUUAUGUUAGAUUGAGGA   1   =||||||||||||||||||=| targets:2508   GUAAAAUACAAUCUAACUCUU   2528 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X2, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012628154.1	ncRNA:21   UAUUUUAUGUUAGAUUGAGGA   1   =||||||||||||||||||=| targets:2519   GUAAAAUACAAUCUAACUCUU   2539 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X1, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012625335.1	ncRNA:21   UAUUUUAUGUUAGAUUGAGGA   1   **|||||||||||*||||||| targets:1885   UCAAAAUACAAUCCAACUCCU   1905 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii auxin-binding protein ABP19a-like (LOC105795634), mRNA	auxin-binding protein ABP19a-like(LOC105795634)	coding protein	psRNATarget
XM_012593614.1	ncRNA:21   UAUUUUAUGUUAGAUUGAGGA   1   |*|||||||||||||||||*| targets:1280   AAAAAAUACAAUCUAACUCAU   1300 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii probable E3 ubiquitin-protein ligase RNF217 (LOC105772321), mRNA	probable E3 ubiquitin-protein ligase RNF217(LOC105772321)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).