ncRNA ID | ath-miR870-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:21395545-21395629 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 1 - UAAUUUGGUGUUUCUUCGAUC - 21 |
Stem-loop(if miRNA) |
          -            A    A      AC    A GAUCGAAGAA CAUCAAAUUAGA UGUG UGCAAA  UUAG C |||||||||| |||||||||||| |||| ||||||  |||| CUAGCUUCUU GUGGUUUAAUCU ACAC ACGUUU  AAUC U           U            A    A      AC    C |
Stem-loop sequence | GAUCGAAGAACAUCAAAUUAGAAUGUGAUGCAAAACUUAGACUCCUAACAUUUGCAACACAAUCUAAUUUGGUGUUUCUUCGAUC |
1 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
2 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |