ncRNA ID | gra-miR8657c |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr8:44962404-44962613 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 177 - UGUAGUAAUUGUAGAAGUUCAGGG - 200 |
Stem-loop(if miRNA) |
U   C          U  U          C    -------ACUAUUC   --  UUUUCCCUUUUUCA   GUAUCUACAAGAUCUUGAUCUAGAAUAUAAAAUUACUCAUUUA  GGA UAAAUUGUAG AA UGUAGAAGUU AGGG              UGU  UA              CUA                                           U  ||| |||||||||| || |||||||||| ||||              |||  ||              |||                                           U  CCU AUUUAACGUU UU ACAUUUUCAA UCCC              GUU  UU              UAU                                           A C   A          U  U          A    AUUAACAUAUUUAA   UU  --------------   UUUCCCAUAAGUAACAUUUUAUCAAACCUUUAUUUUAUAUACG |
Stem-loop sequence | UGGACUAAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUCUGUUAUUUUCCCUUUUUCACUAGUAUCUACAAGAUCUUGAUCUAGAAUAUAAAAUUACUCAUUUAUUAGCAUAUAUUUUAUUUCCAAACUAUUUUACAAUGAAUACCCUUUUAUUUUUUUGAAUUUAUACAAUUACCCUAAACUUUUACAUUUUUUGCAAUUUAAUCCC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |