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BaseInfo

ncRNA ID gra-miR8657c
Species Gossypium raimondii
Class miRNA
Genome position chr8:44962404-44962613 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 177 - UGUAGUAAUUGUAGAAGUUCAGGG - 200
Stem-loop(if miRNA) U   C          U  U          C    -------ACUAUUC   --  UUUUCCCUUUUUCA   GUAUCUACAAGAUCUUGAUCUAGAAUAUAAAAUUACUCAUUUA
 GGA UAAAUUGUAG AA UGUAGAAGUU AGGG              UGU  UA              CUA                                           U
 ||| |||||||||| || |||||||||| ||||              |||  ||              |||                                           U
 CCU AUUUAACGUU UU ACAUUUUCAA UCCC              GUU  UU              UAU                                           A
C   A          U  U          A    AUUAACAUAUUUAA   UU  --------------   UUUCCCAUAAGUAACAUUUUAUCAAACCUUUAUUUUAUAUACG
Stem-loop sequence UGGACUAAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUCUGUUAUUUUCCCUUUUUCACUAGUAUCUACAAGAUCUUGAUCUAGAAUAUAAAAUUACUCAUUUAUUAGCAUAUAUUUUAUUUCCAAACUAUUUUACAAUGAAUACCCUUUUAUUUUUUUGAAUUUAUACAAUUACCCUAAACUUUUACAUUUUUUGCAAUUUAAUCCC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).