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BaseInfo

ncRNA ID	gra-miR7504d
Species	Gossypium raimondii
Class	miRNA
Genome position	chr8:43497227-43497350 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	91 - AGGAAAAAAAAUCUGAUUUGUCAU - 114
Stem-loop(if miRNA)	C       G            U      C        CUUCAGCUUUUUCCUCUUCAAAAA       UUCAA  AAUAGGA AAUGACAAAUCA AUUUUU UUUCUGAU                        UUUUAAA     C  ||||||| |||||||||||| |||||| ||||||||                        |||||||  UUAUCUU UUACUGUUUAGU UAAAAA AAGGACUA                        AAAAUUU     A A       A            C      A        ------------------------       UAAAA
Stem-loop sequence	CAAUAGGAGAAUGACAAAUCAUAUUUUUCUUUCUGAUCUUCAGCUUUUUCCUCUUCAAAAAUUUUAAAUUCAACAAAAAUUUUAAAAAUCAGGAAAAAAAAUCUGAUUUGUCAUUAUUCUAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012607182.1	ncRNA:24   UA--CUGUUUAGUCUAAAAAAAAGGA   1   ||--||-|=||||||||||||||=|| targets:157   AUAAGA-AGAUCAGAUUUUUUUUUCU   181 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like (LOC105782443), transcript variant X1, mRNA	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like(LOC105782443)	coding protein	psRNATarget
XM_012607184.1	ncRNA:24   UA--CUGUUUAGUCUAAAAAAAAGGA   1   ||--||-|=||||||||||||||=|| targets:158   AUAAGA-AGAUCAGAUUUUUUUUUCU   182 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like (LOC105782443), transcript variant X3, mRNA	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like(LOC105782443)	coding protein	psRNATarget
XM_012607183.1	ncRNA:24   UA--CUGUUUAGUCUAAAAAAAAGGA   1   ||--||-|=||||||||||||||=|| targets:158   AUAAGA-AGAUCAGAUUUUUUUUUCU   182 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like (LOC105782443), transcript variant X2, mRNA	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like(LOC105782443)	coding protein	psRNATarget
XM_012609853.1	ncRNA:24   UACUGUUUAGUCUAAAAAAAAGGA   1   ||||*|||*|||||||||||*||| targets:121   AUGAAAAAGCAGAUUUUUUUACCU   144 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105784068 (LOC105784068), transcript variant X2, mRNA	uncharacterized LOC105784068(LOC105784068)	coding protein	psRNATarget
XM_012609852.1	ncRNA:24   UACUGUUUAGUCUAAAAAAAAGGA   1   ||||*|||*|||||||||||*||| targets:121   AUGAAAAAGCAGAUUUUUUUACCU   144 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105784068 (LOC105784068), transcript variant X1, mRNA	uncharacterized LOC105784068(LOC105784068)	coding protein	psRNATarget
XM_012609854.1	ncRNA:24   UACUGUUUAGUCUAAAAAAAAGGA   1   ||||*|||*|||||||||||*||| targets:121   AUGAAAAAGCAGAUUUUUUUACCU   144 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105784068 (LOC105784068), transcript variant X3, mRNA	uncharacterized LOC105784068(LOC105784068)	coding protein	psRNATarget
XM_012609855.1	ncRNA:24   UACUGUUUAGUCUAAAAAAAAGGA   1   ||||*|||*|||||||||||*||| targets:121   AUGAAAAAGCAGAUUUUUUUACCU   144 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105784068 (LOC105784068), transcript variant X4, mRNA	uncharacterized LOC105784068(LOC105784068)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).