ncRNA ID | gra-miR8737 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr8:39246641-39247007 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - GUGUAUCUCCUGAAAACGACGACA - 34 |
Stem-loop(if miRNA) |
A            G                        -   A                UU                  A      UA    AAC   --G      UUUUCAAAAAAGU        A  UG       AU  GUGUUU   CAAUUAU   UUU UU    U      -  -       GUUAGG  CGUGUUGAGUUG CGUUGUUUUUAGGGGAUACGCAGA AAG CGUGUCUAGCUCAGCG  UUUUUUUUCCUGUUGUUA GUAAAA  CACU   AUG   AAGCGC             GUCCACAU GG  UGCUUUU  CC      UCC       GGU   G  UUAA UUUUAA CU AUUUACG      G  |||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||||  ||||   |||   ||||||             |||||||| ||  |||||||  ||      |||       |||   |  |||| |||||| || |||||||  GUGCGGCUCGAC GCAGCAAAAGUCCUCUAUGUGUCU UUC GUGCAGAUCGAGUCGU  GAAAAAAGGGACAACAAU CAUUUU  GUGA   UAC   UUCGCG             CAGGUGUA CC  GCGAAAA  GG      AGG       UUA   U  GAUU AGGAUU GA UAAGUGU      C -            A                        A   -                --                  C      GC    --C   ACA      -------------        C  GU       -C  --AUUU   -ACUUUU   -UU GG    U      U  A       AUUUUU |
Stem-loop sequence | ACGUGUUGAGUUGGCGUUGUUUUUAGGGGAUACGCAGAAAGACGUGUCUAGCUCAGCGUUUUUUUUUUCCUGUUGUUAAGUAAAAUACACUAACAUGGAAGCGCUUUUCAAAAAAGUGUCCACAUAGGUGUGCUUUUAUCCGUGUUUUCCCAAUUAUGGUUUUGUUUUAAUUUUUAACUAUUUACGGUUAGGGCUUUUUAUGUGAAUAAGUUUAGGAUUUAGGGUUUAUUUUUUCAGGAUUUAGGCAAAAGCGUGCCCAUGUGGACGCGCUUACACAUCAGUGCGUUUUACCUAACAACAGGGAAAAAAGUGCUGAGCUAGACGUGCUUAUCUGUGUAUCUCCUGAAAACGACGACAGCUCGGCGUG |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |