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BaseInfo

ncRNA ID gra-miR8737
Species Gossypium raimondii
Class miRNA
Genome position chr8:39246641-39247007 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - GUGUAUCUCCUGAAAACGACGACA - 34
Stem-loop(if miRNA) A            G                        -   A                UU                  A      UA    AAC   --G      UUUUCAAAAAAGU        A  UG       AU  GUGUUU   CAAUUAU   UUU UU    U      -  -       GUUAGG
 CGUGUUGAGUUG CGUUGUUUUUAGGGGAUACGCAGA AAG CGUGUCUAGCUCAGCG  UUUUUUUUCCUGUUGUUA GUAAAA  CACU   AUG   AAGCGC             GUCCACAU GG  UGCUUUU  CC      UCC       GGU   G  UUAA UUUUAA CU AUUUACG      G
 |||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||||  ||||   |||   ||||||             |||||||| ||  |||||||  ||      |||       |||   |  |||| |||||| || |||||||
 GUGCGGCUCGAC GCAGCAAAAGUCCUCUAUGUGUCU UUC GUGCAGAUCGAGUCGU  GAAAAAAGGGACAACAAU CAUUUU  GUGA   UAC   UUCGCG             CAGGUGUA CC  GCGAAAA  GG      AGG       UUA   U  GAUU AGGAUU GA UAAGUGU      C
-            A                        A   -                --                  C      GC    --C   ACA      -------------        C  GU       -C  --AUUU   -ACUUUU   -UU GG    U      U  A       AUUUUU
Stem-loop sequence ACGUGUUGAGUUGGCGUUGUUUUUAGGGGAUACGCAGAAAGACGUGUCUAGCUCAGCGUUUUUUUUUUCCUGUUGUUAAGUAAAAUACACUAACAUGGAAGCGCUUUUCAAAAAAGUGUCCACAUAGGUGUGCUUUUAUCCGUGUUUUCCCAAUUAUGGUUUUGUUUUAAUUUUUAACUAUUUACGGUUAGGGCUUUUUAUGUGAAUAAGUUUAGGAUUUAGGGUUUAUUUUUUCAGGAUUUAGGCAAAAGCGUGCCCAUGUGGACGCGCUUACACAUCAGUGCGUUUUACCUAACAACAGGGAAAAAAGUGCUGAGCUAGACGUGCUUAUCUGUGUAUCUCCUGAAAACGACGACAGCUCGGCGUG

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).