ncRNA ID | gra-miR8663b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr8:33878980-33879265 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 254 - UGAGGCAUGAACUUGGCAAUUUU - 276 |
Stem-loop(if miRNA) |
-       U    A   A                C        U       --AAA         -UC     G       AAACUA          UU     G      G         C    G        -AG    UGA  AAUCACU UUUG GGC UGAACUUGGCAAUUUU CCCACAUU GGGCCUG     UUUUUUUUG   CAAGU AGGCCCU      GGCAAUUGUU  CAUAU GGGGCU GAACUUUUU UUUG UCCAAGUU   UCCU   A  ||||||| |||| ||| |||||||||||||||| |||||||| |||||||     |||||||||   ||||| |||||||      ||||||||||  ||||| |||||| ||||||||| |||| ||||||||   ||||  UUAGUGA AAAC CCG ACUUGAAUCGUUGAAA GGGUGUAA CCCGGAC     AAAAAAAAC   GUUCA UCCGGGA      CUGUUGACAA  GUGUA CCCCGA CUUGGAAAA AAAC AGGUUCAA   AGGG   A U       U    C   G                A        C       CUAAA         CAA     A       CUUAAA          GG     A      A         U    -        ACA    UGU |
Stem-loop sequence | AAUCACUUUUUGAGGCAUGAACUUGGCAAUUUUCCCCACAUUUGGGCCUGAAAUUUUUUUUGUCCAAGUGAGGCCCUAAACUAGGCAAUUGUUUUCAUAUGGGGGCUGGAACUUUUUCUUUGGUCCAAGUUAGUCCUUGAAAUGUGGGAACAAACUUGGACAAAUAAAAGGUUCAAGCCCCAAUGUGGGAACAGUUGUCAAAUUCAGGGCCUAACUUGAACCAAAAAAAAAAAUCCAGGCCCCAAUGUGGGAAAAGUUGCUAAGUUCAGGCCCCAAAUAGUGAUUU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |