ncRNA ID | ath-miR4245 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:21161506-21161652 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 104 - ACAAAGUUUUAUACUGACAAU - 124 |
Stem-loop(if miRNA) |
---------------------                U     A         --CUAU     --A     ----U   UUUCUUU                      GAAUUGUCAGUAUAAA CUUUG UCUGAUACU      UAGUU   GUAUG     GAA       U                      |||||||||||||||| ||||| |||||||||      |||||   |||||     |||                      CUUAACAGUCAUAUUU GAAAC AGAUUAUGA      AUCGA   CGUAC     CUU       U AAAACUUUUAGUCCAUUCUAA                U     A         AUAACU     GAG     UUAUU   UUAACAA |
Stem-loop sequence | GAAUUGUCAGUAUAAAUCUUUGAUCUGAUACUCUAUUAGUUAGUAUGUGAAUUUCUUUUUAACAAUUUUCUUAUUCAUGCGAGAGCUAUCAAUAAGUAUUAGAACAAAGUUUUAUACUGACAAUUCAAUCUUACCUGAUUUUCAAAA |
1 | PMID:22221297
"Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology"; Zhang B, Xie D, Jin Z; J Integr Plant Biol. 54:73-86(2012). |