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BaseInfo

ncRNA ID ath-miR4245
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:21161506-21161652 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 104 - ACAAAGUUUUAUACUGACAAU - 124
Stem-loop(if miRNA) ---------------------                U     A         --CUAU     --A     ----U   UUUCUUU
                     GAAUUGUCAGUAUAAA CUUUG UCUGAUACU      UAGUU   GUAUG     GAA       U
                     |||||||||||||||| ||||| |||||||||      |||||   |||||     |||
                     CUUAACAGUCAUAUUU GAAAC AGAUUAUGA      AUCGA   CGUAC     CUU       U
AAAACUUUUAGUCCAUUCUAA                U     A         AUAACU     GAG     UUAUU   UUAACAA
Stem-loop sequence GAAUUGUCAGUAUAAAUCUUUGAUCUGAUACUCUAUUAGUUAGUAUGUGAAUUUCUUUUUAACAAUUUUCUUAUUCAUGCGAGAGCUAUCAAUAAGUAUUAGAACAAAGUUUUAUACUGACAAUUCAAUCUUACCUGAUUUUCAAAA

Reference

1 PMID:22221297
"Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology";
Zhang B, Xie D, Jin Z;
J Integr Plant Biol. 54:73-86(2012).