Search result

BaseInfo

ncRNA ID gra-miR8674b
Species Gossypium raimondii
Class miRNA
Genome position chr8:8534158-8534620 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 430 - UUAGAAAUGGACCAUGGAUGAUGU - 453
Stem-loop(if miRNA) A    U   A                  C    C  G             -AUCUG         CC   C    A            G    --G  --GUU    C    C               G           --     A CGAAUCCAAACCUUGAACCUCGAAUUUUAAACCCUAAACUCAAACCCAAACCCUAAAUCCUAAAACUUAAGUUCAAGGUUUAGGGUU
 UCUU CCU UCACAUUAUCCAUGGUCU UUUC AA UAUUUAAUGACAU      AAUUUUUUU  AUG CAUU ACACAUAAUUUU GUAA   UU     CCUU AGCC UAAAUCUAGAACCUU AACCCCAAAUC  UGAAC C                                                                                       C
 |||| ||| |||||||||||||||||| |||| || |||||||||||||      |||||||||  ||| |||| |||||||||||| ||||   ||     |||| |||| ||||||||||||||| |||||||||||  ||||| |                                                                                       A
 AGAA GGG GGUGUAGUAGGUACCAGG AAAG UU AUAAAUUACUGUA      UUAAAAAAA  UAC GUAA UGUGUAUUAAAA UAUU   AG     GGAA UUGG AUUUGGAUCUUGGGG UUGAGACUUAG  UUUAG A                                                                                       A
-    U   -                  U    A  A             AAAUUG         --   A    C            A    AAA  AAAAU    C    A               G           AA     - ACUUAGAAUUUGGAACUUGGGUUUUGGGAUUUGGAAUUUGGGAUUCGGGUUUGGAAGUUGGAGCUUGGAUUUGGAACUCGGGGUUUA
Stem-loop sequence AUCUUUCCUAUCACAUUAUCCAUGGUCUCUUUCCAAGUAUUUAAUGACAUAUCUGAAUUUUUUUCCAUGCCAUUAACACAUAAUUUUGGUAAGUUGUUCCUUCAGCCCUAAAUCUAGAACCUUGAACCCCAAAUCUGAACACCGAAUCCAAACCUUGAACCUCGAAUUUUAAACCCUAAACUCAAACCCAAACCCUAAAUCCUAAAACUUAAGUUCAAGGUUUAGGGUUCAAAUUUGGGGCUCAAGGUUUAGGUUCGAGGUUGAAGGUUUGGGCUUAGGGUUUAAGGUUUAGGGUUUUGGGUUCAAGGUUUAAGAUUCAAGAUUUAAGAUUCAGAGUUGGGGGUUCUAGGUUUAAGGUUCAAGGUAAAAGAAAAUUAUAAAAAUUAUGUGUCAAUGACAUAAAAAAAUUGUUAAAAUGUCAUUAAAUAAUUAGAAAUGGACCAUGGAUGAUGUGGGGGUAAGA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).