ncRNA ID | gra-miR8674b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr8:8534158-8534620 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 430 - UUAGAAAUGGACCAUGGAUGAUGU - 453 |
Stem-loop(if miRNA) |
A U A C C G -AUCUG CC C A G --G --GUU C C G -- A CGAAUCCAAACCUUGAACCUCGAAUUUUAAACCCUAAACUCAAACCCAAACCCUAAAUCCUAAAACUUAAGUUCAAGGUUUAGGGUU UCUU CCU UCACAUUAUCCAUGGUCU UUUC AA UAUUUAAUGACAU AAUUUUUUU AUG CAUU ACACAUAAUUUU GUAA UU CCUU AGCC UAAAUCUAGAACCUU AACCCCAAAUC UGAAC C C |||| ||| |||||||||||||||||| |||| || ||||||||||||| ||||||||| ||| |||| |||||||||||| |||| || |||| |||| ||||||||||||||| ||||||||||| ||||| | A AGAA GGG GGUGUAGUAGGUACCAGG AAAG UU AUAAAUUACUGUA UUAAAAAAA UAC GUAA UGUGUAUUAAAA UAUU AG GGAA UUGG AUUUGGAUCUUGGGG UUGAGACUUAG UUUAG A A - U - U A A AAAUUG -- A C A AAA AAAAU C A G AA - ACUUAGAAUUUGGAACUUGGGUUUUGGGAUUUGGAAUUUGGGAUUCGGGUUUGGAAGUUGGAGCUUGGAUUUGGAACUCGGGGUUUA |
Stem-loop sequence | AUCUUUCCUAUCACAUUAUCCAUGGUCUCUUUCCAAGUAUUUAAUGACAUAUCUGAAUUUUUUUCCAUGCCAUUAACACAUAAUUUUGGUAAGUUGUUCCUUCAGCCCUAAAUCUAGAACCUUGAACCCCAAAUCUGAACACCGAAUCCAAACCUUGAACCUCGAAUUUUAAACCCUAAACUCAAACCCAAACCCUAAAUCCUAAAACUUAAGUUCAAGGUUUAGGGUUCAAAUUUGGGGCUCAAGGUUUAGGUUCGAGGUUGAAGGUUUGGGCUUAGGGUUUAAGGUUUAGGGUUUUGGGUUCAAGGUUUAAGAUUCAAGAUUUAAGAUUCAGAGUUGGGGGUUCUAGGUUUAAGGUUCAAGGUAAAAGAAAAUUAUAAAAAUUAUGUGUCAAUGACAUAAAAAAAUUGUUAAAAUGUCAUUAAAUAAUUAGAAAUGGACCAUGGAUGAUGUGGGGGUAAGA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |