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BaseInfo

ncRNA ID gra-miR8686
Species Gossypium raimondii
Class miRNA
Genome position chr8:4164151-4164348 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AGAGAAUGUCAGUACUAGAGGCAG - 34
Stem-loop(if miRNA) -                   C              CAA      GAA         A                     ----A  AUCUGUAAAAACAUG
 UACUAGGGACAGAGAAUGU AGUACUAGAGGCAG   AAUCAA   AAAAUAGUG GGCCCUAUCAUGAGCUGUAAU     GC               U
 ||||||||||||||||||| ||||||||||||||   ||||||   ||||||||| |||||||||||||||||||||     ||               A
 AUGAUCCCUGUCUCUUACA UCAUGAUCUCCGUU   UUAGUU   UUUUAUCAC CCGGGAUAGUACUCGACGUUA     CU               U
C                   A              ACC      AUG         C                     ACUAU  UCACAAGCCCAUAAA
Stem-loop sequence UACUAGGGACAGAGAAUGUCAGUACUAGAGGCAGCAAAAUCAAGAAAAAAUAGUGAGGCCCUAUCAUGAGCUGUAAUAGCAUCUGUAAAAACAUGUAUAAAUACCCGAACACUUCUAUCAAUUGCAGCUCAUGAUAGGGCCCCACUAUUUUGUAUUGAUUCCAUUGCCUCUAGUACUAACAUUCUCUGUCCCUAGUAC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).