ncRNA ID | gra-miR8686 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr8:4164151-4164348 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - AGAGAAUGUCAGUACUAGAGGCAG - 34 |
Stem-loop(if miRNA) |
-                   C              CAA      GAA         A                     ----A  AUCUGUAAAAACAUG  UACUAGGGACAGAGAAUGU AGUACUAGAGGCAG   AAUCAA   AAAAUAGUG GGCCCUAUCAUGAGCUGUAAU     GC               U  ||||||||||||||||||| ||||||||||||||   ||||||   ||||||||| |||||||||||||||||||||     ||               A  AUGAUCCCUGUCUCUUACA UCAUGAUCUCCGUU   UUAGUU   UUUUAUCAC CCGGGAUAGUACUCGACGUUA     CU               U C                   A              ACC      AUG         C                     ACUAU  UCACAAGCCCAUAAA |
Stem-loop sequence | UACUAGGGACAGAGAAUGUCAGUACUAGAGGCAGCAAAAUCAAGAAAAAAUAGUGAGGCCCUAUCAUGAGCUGUAAUAGCAUCUGUAAAAACAUGUAUAAAUACCCGAACACUUCUAUCAAUUGCAGCUCAUGAUAGGGCCCCACUAUUUUGUAUUGAUUCCAUUGCCUCUAGUACUAACAUUCUCUGUCCCUAGUAC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |