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BaseInfo

ncRNA ID	gra-miR8744
Species	Gossypium raimondii
Class	miRNA
Genome position	chr7:60032403-60032660 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - UCAAAAAAUGGGCAAAGUAGUCAU - 34
Stem-loop(if miRNA)	-   C A   C            C         ------AU          U     AUUCAUC      A               -    CG            UAUCUU     -- U   --CC        A  UUC C CUA UCAAAAAAUGGG AAAGUAGUC        UUAGAUCAAA AGCAA       UUUUCU UUAAAAAUUUCAUCC UUUU  CUGUUAAAAACU      UGUAA  G CAG    UCAGAUAC C  ||| | ||| |||||||||||| |||||||||        |||||||||| |||||       |||||| ||||||||||||||| ||||  ||||||||||||      |||||  | |||    ||||||||  AAG G GAU AGUUUUUUACUC UUUUAUCAG        AAUCUAGUUU UCGUU       AAAAGA AAUUUUUAAAGUAGG AAAA  GACAAUUUUUGA      GCAUU  C GUC    AGUUUAUG A A   A A   A            A         AAAUAUAC          U     CUACCAU      C               U    AU            ----CC     GA U   UAUU        U
Stem-loop sequence	UUCCCACUACUCAAAAAAUGGGCAAAGUAGUCAUUUAGAUCAAAUAGCAAAUUCAUCUUUUCUAUUAAAAAUUUCAUCCUUUUCGCUGUUAAAAACUUAUCUUUGUAAGUCAGCCUCAGAUACACAUGUAUUUGAUUAUCUGUCAGUUACGCCAGUUUUUAACAGUAAAAAUGGAUGAAAUUUUUAACAGAAAAUACCAUCUUGCUUUUUGAUCUAACAUAUAAAGACUAUUUUACUCAUUUUUUGAAUAGAGAGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012587986.1	ncRNA:24   UA---CUGAUGAAACGGGUAAAAAACU   1   ||---||=||*|||||=|||||||||| targets:1802   AUAGGGAUUAAUUUGCUCAUUUUUUGA   1828 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/threonine-protein kinase AFC1 (LOC105768202), transcript variant X2, mRNA	serine/threonine-protein kinase AFC1(LOC105768202)	coding protein	psRNATarget
XM_012587985.1	ncRNA:24   UA---CUGAUGAAACGGGUAAAAAACU   1   ||---||=||*|||||=|||||||||| targets:1693   AUAGGGAUUAAUUUGCUCAUUUUUUGA   1719 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/threonine-protein kinase AFC1 (LOC105768202), transcript variant X1, mRNA	serine/threonine-protein kinase AFC1(LOC105768202)	coding protein	psRNATarget
XM_012600166.1	ncRNA:24   UA---CUGAUGAAACGGGUAAAAAACU   1   ||---|||||*|||||||||||||*|| targets:1850   AUAGAGACUAAUUUGCCCAUUUUUAGA   1876 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii phytosulfokine receptor 1 (LOC105777101), mRNA	phytosulfokine receptor 1(LOC105777101)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).