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BaseInfo

ncRNA ID	gra-miR7502f
Species	Gossypium raimondii
Class	miRNA
Genome position	chr7:57294600-57294742 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUUAGCAGUAGAAAUAGAUGA - 31
Stem-loop(if miRNA)	A       UUUA                    AUUG     GUUAAUAGAAUAAUCAAACAAUUACACGUGU  UUAAAAA    AUCUAUUUCUAUUGUUAAAA    ACGUG                               U  |||||||    ||||||||||||||||||||    |||||  AAUUUUU    UAGAUAAAGAUGACGAUUUU    AACCA                               G C       CUAG                    ---A     GGGAUAUGUAGUAUUACUCCAUGUACAUUGU
Stem-loop sequence	AUUAAAAAUUUAAUCUAUUUCUAUUGUUAAAAAUUGACGUGGUUAAUAGAAUAAUCAAACAAUUACACGUGUUGUGUUACAUGUACCUCAUUAUGAUGUAUAGGGACCAAAUUUUAGCAGUAGAAAUAGAUGAUCUUUUUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012591224.1	ncRNA:21   AGUAGAUAAAGAUGACGAUUU   1   *||*|||||||||||||||*| targets:930   ACAGCUAUUUCUACUGCUACA   950 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor bHLH145-like (LOC105770147), transcript variant X1, mRNA	transcription factor bHLH145-like(LOC105770147)	coding protein	psRNATarget
XM_012606419.1	ncRNA:21   AGUAGAUAAAGAUGACGAUUU   1   *||||*|||||*||||||||| targets:273   ACAUCCAUUUCAACUGCUAAA   293 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable 28S rRNA (cytosine-C(5))-methyltransferase (LOC105781888), transcript variant X1, mRNA	probable 28S rRNA (cytosine-C(5))-methyltransferase(LOC105781888)	coding protein	psRNATarget
XM_012606431.1	ncRNA:21   AGUAGAUAAAGAUGACGAUUU   1   *||||*|||||*||||||||| targets:274   ACAUCCAUUUCAACUGCUAAA   294 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable 28S rRNA (cytosine-C(5))-methyltransferase (LOC105781888), transcript variant X3, mRNA	probable 28S rRNA (cytosine-C(5))-methyltransferase(LOC105781888)	coding protein	psRNATarget
XM_012606423.1	ncRNA:21   AGUAGAUAAAGAUGACGAUUU   1   *||||*|||||*||||||||| targets:143   ACAUCCAUUUCAACUGCUAAA   163 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable 28S rRNA (cytosine-C(5))-methyltransferase (LOC105781888), transcript variant X2, mRNA	probable 28S rRNA (cytosine-C(5))-methyltransferase(LOC105781888)	coding protein	psRNATarget
XM_012593637.1	ncRNA:21   AGUAGAUAAAGAUGACGAUUU   1   **=|||*|||||||||||||= targets:1718   AAGUCUUUUUCUACUGCUAAG   1738 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii protein IQ-DOMAIN 32-like (LOC105772352), mRNA	protein IQ-DOMAIN 32-like(LOC105772352)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).