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BaseInfo

ncRNA ID gra-miR8741
Species Gossypium raimondii
Class miRNA
Genome position chr7:56774055-56774254 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UAGCACUGAAGAUGAUGAUGG - 31
Stem-loop(if miRNA) -     CAUAC                        C    A     -UAAC    ----------AAC   UUCUCAUUUUCUUGAGGGAGUGGACAUAGCAAAUCU
 AUCCC     UAGCACUGAAGAUGAUGAUGGUGA GGGC UGAUC     UUGG             CAG                                    G
 |||||     |||||||||||||||||||||||| |||| |||||     ||||             |||                                    A
 UAGGG     AUCGUGACUUCUACUACUACCACU CCCG ACUAG     AGCC             ACU                                    U
A     -----                        A    A     UACAU    AGCUCCAAACACU   UCACAGUUCGAGUCGGUCAUCUUUUUUGUUUCUCUU
Stem-loop sequence AUCCCCAUACUAGCACUGAAGAUGAUGAUGGUGACGGGCAUGAUCUAACUUGGAACCAGUUCUCAUUUUCUUGAGGGAGUGGACAUAGCAAAUCUGAUUUCUCUUUGUUUUUUCUACUGGCUGAGCUUGACACUUCAUCACAAACCUCGACCGAUACAUGAUCAAGCCCAUCACCAUCAUCAUCUUCAGUGCUAGGGAUA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).