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BaseInfo

ncRNA ID	novel_osa_miR14235
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:13375954-13376054 [+]
Reference genome	IRGSP-1.0
Source	SRR1738209
Length	21
Mature sequence(if miRNA)	81 - UCCAGCUCCCGCGCCUCCUCC - 101
Stem-loop(if miRNA)	--   C     C           UC   AU  U C     CG   CUAC   A   AGG GGCGU GGAGCUGGAGC  GAG  GA G GCUCC  GUU    AGC G   ||| ||||| |||||||||||  |||  || | |||||  |||    |||   UCC CCGCG CCUCGACCUCG  CUC  CU C CGAGG  CGA    UCG C CC   U     C           GA   --  C C     --   -UCU   G
Stem-loop sequence	AGGCGGCGUCGGAGCUGGAGCUCGAGAUGAUGCGCUCCCGGUUCUACAGCAGCGGCUUCUAGCGGAGCCCCUCCUCAGGCUCCAGCUCCCGCGCCUCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109888.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||*||||||||| targets:298   GGAGGAGGCGCAGGAGCUGGA   318 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-149-E02, full insert sequence	NA	coding protein	psRNATarget
XM_015759332.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||||||||||*| targets:175   GGAGGAGGCGCGGGAGCUGCA   195 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 40S ribosomal protein S20-1 (LOC4348185), mRNA	40S ribosomal protein S20-1(LOC4348185)	coding protein	psRNATarget
AK121628.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||||||||||*| targets:166   GGAGGAGGCGCGGGAGCUGCA   186 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033050C15, full insert sequence	NA	coding protein	psRNATarget
CT833897.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||||||||||*| targets:160   GGAGGAGGCGCGGGAGCUGCA   180 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA007O14, full insert sequence	NA	coding protein	psRNATarget
CT833898.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||||||||||*| targets:160   GGAGGAGGCGCGGGAGCUGCA   180 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016L23, full insert sequence	NA	coding protein	psRNATarget
BT131043.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||||||||||*| targets:16   GGAGGAGGCGCGGGAGCUGCA   36 Target Full Sequence	1.5	Oryza sativa clone RRlibB00076 mRNA sequence	NA	coding protein	psRNATarget
XM_015781407.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||*||||||||* targets:764   GGAGGAGGCGCAGGAGCUGGU   784 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 93A2 (LOC4334886), mRNA	cytochrome P450 93A2(LOC4334886)	coding protein	psRNATarget
AK100972.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||*||||||||* targets:628   GGAGGAGGCGCAGGAGCUGGU   648 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023143C19, full insert sequence	NA	coding protein	psRNATarget
AK105745.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||||||||*||||||||* targets:626   GGAGGAGGCGCAGGAGCUGGU   646 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-202-B05, full insert sequence	NA	coding protein	psRNATarget
AK065321.1	ncRNA:21   CCUCC-UCCGCGCCCUCGACCU   1   *||||-|||||||||||||||* targets:164   UGAGGGAGGCGCGGGAGCUGGU   185 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013002P15, full insert sequence	NA	coding protein	psRNATarget
XM_015791791.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||*|||||||*||||||||| targets:245   GGACGAGGCGCCGGAGCUGGA   265 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein LONGIFOLIA 1 (LOC4343837), mRNA	protein LONGIFOLIA 1(LOC4343837)	coding protein	psRNATarget
AK066770.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||*|||||||*||||||||| targets:246   GGACGAGGCGCCGGAGCUGGA   266 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013088M15, full insert sequence	NA	coding protein	psRNATarget
XM_015762266.1	ncRNA:21   CCUCC-UCCGCGCCCUCGACCU   1   *||||-|||||||||||||||* targets:164   UGAGGGAGGCGCGGGAGCUGGU   185 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 (LOC4350524), mRNA	probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1(LOC4350524)	coding protein	psRNATarget
XM_015757820.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   *|=||||||||||*||||||| targets:273   CGGGGAGGCGCGGAAGCUGGA   293 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (LOC4349410), mRNA	phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic(LOC4349410)	coding protein	psRNATarget
AK109667.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   *|=||||||||||*||||||| targets:279   CGGGGAGGCGCGGAAGCUGGA   299 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-A06, full insert sequence	NA	coding protein	psRNATarget
XM_015775889.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||*|||||||||||||*| targets:484   GGAGGCGGCGCGGGAGCUGCA   504 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group myosin-binding protein 7 (LOC4334372), mRNA	myosin-binding protein 7(LOC4334372)	coding protein	psRNATarget
AK071787.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||*|||||||||||||*| targets:335   GGAGGCGGCGCGGGAGCUGCA   355 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023110P10, full insert sequence	NA	coding protein	psRNATarget
AY224542.1	ncRNA:21   CCUCCUCCGCGCCCUCGACCU   1   |||||*|||||||||||||*| targets:180   GGAGGCGGCGCGGGAGCUGCA   200 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) isolate 23484 heavy meromyosin-like protein mRNA, complete cds	NA	coding protein	psRNATarget