ncRNA ID | gra-miR8708 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr7:51635052-51635273 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 199 - AGGAGGAGUUAUGGAUAGUUUUA - 221 |
Stem-loop(if miRNA) |
G      A                     C    AAAAAAAUAUAA    -  G -----   AAA  A  --      AAUAGAUUUAAGUUAAAUUAUUAAUUUUAAAAAUAUCAA  AGGAGG GUUAUGGAUAGUUUUAGGCAU GUGU            UAAU UA G     AUA   UU UA  AAAUUA                                       A  |||||| ||||||||||||||||||||| ||||            |||| || |     |||   || ||  ||||||                                       A  UCUUUC CAAUACCUAUCAAGAUUCGUA CAUA            UUUG AA G     AAA   AG UG  AACUUG                                       U A      C                     A    ----GUUGAAUC    A  - UCUAU   ---  -  UU      AUCUGCAAGUUUAUUUUUUUUAUCUUACCAAAACAUUAA |
Stem-loop sequence | GAGGAGGAGUUAUGGAUAGUUUUAGGCAUCGUGUAAAAAAAUAUAAUAAUUAGGAUAAAAUUAUAAAAUUAAAUAGAUUUAAGUUAAAUUAUUAAUUUUAAAAAUAUCAAAAUAAUUACAAAACCAUUCUAUUUUUUUUAUUUGAACGUCUAGUUCAAUUGUGAAAAUAUCUGAAAGUUUCUAAGUUGAUACAAUGCUUAGAACUAUCCAUAACCCUUUCUA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |