Search result

BaseInfo

ncRNA ID gra-miR8708
Species Gossypium raimondii
Class miRNA
Genome position chr7:51635052-51635273 [-]
Reference genome Graimondii2_0
Source miRBase
Length 23
Mature sequence(if miRNA) 199 - AGGAGGAGUUAUGGAUAGUUUUA - 221
Stem-loop(if miRNA) G      A                     C    AAAAAAAUAUAA    -  G -----   AAA  A  --      AAUAGAUUUAAGUUAAAUUAUUAAUUUUAAAAAUAUCAA
 AGGAGG GUUAUGGAUAGUUUUAGGCAU GUGU            UAAU UA G     AUA   UU UA  AAAUUA                                       A
 |||||| ||||||||||||||||||||| ||||            |||| || |     |||   || ||  ||||||                                       A
 UCUUUC CAAUACCUAUCAAGAUUCGUA CAUA            UUUG AA G     AAA   AG UG  AACUUG                                       U
A      C                     A    ----GUUGAAUC    A  - UCUAU   ---  -  UU      AUCUGCAAGUUUAUUUUUUUUAUCUUACCAAAACAUUAA
Stem-loop sequence GAGGAGGAGUUAUGGAUAGUUUUAGGCAUCGUGUAAAAAAAUAUAAUAAUUAGGAUAAAAUUAUAAAAUUAAAUAGAUUUAAGUUAAAUUAUUAAUUUUAAAAAUAUCAAAAUAAUUACAAAACCAUUCUAUUUUUUUUAUUUGAACGUCUAGUUCAAUUGUGAAAAUAUCUGAAAGUUUCUAAGUUGAUACAAUGCUUAGAACUAUCCAUAACCCUUUCUA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).