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BaseInfo

ncRNA ID gra-miR8701
Species Gossypium raimondii
Class miRNA
Genome position chr7:27471371-27471615 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - AGGGGCUUAGAAAGAUGGGAC - 31
Stem-loop(if miRNA) A    C                 C             U     G   AACCCCAA       - UCGACCUAGUGGAGUCUCCAAGUUCUUUUGUUAAGGUGAGGAGACAUUACAAUCUAGCAAAA
 CCAU GUAGGUCUCAUCUUUCU AGCCCCUUAUUGC UCCAU ACU        AGUUUGC U                                                              C
 |||| ||||||||||||||||| ||||||||||||| ||||| |||        ||||||| |
 GGUG CAUCCAGGGUAGAAAGA UCGGGGAAUAACG AGGUA UGG        UGUUGGC G                                                              A
G    C                 U             U     G   --------       U GUGGCGUCAACAAAAGAACUCGGACGAGGUUAGAUGAAGAAACGGUAGAGAGAUGUUGUUGA
Stem-loop sequence ACCAUCGUAGGUCUCAUCUUUCUCAGCCCCUUAUUGCUUCCAUGACUAACCCCAAAGUUUGCUUCGACCUAGUGGAGUCUCCAAGUUCUUUUGUUAAGGUGAGGAGACAUUACAAUCUAGCAAAACAAGUUGUUGUAGAGAGAUGGCAAAGAAGUAGAUUGGAGCAGGCUCAAGAAAACAACUGCGGUGGUCGGUUGUGGUGAUGGAUGCAAUAAGGGGCUUAGAAAGAUGGGACCUACCGUGGG

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).