ncRNA ID | gra-miR8701 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr7:27471371-27471615 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - AGGGGCUUAGAAAGAUGGGAC - 31 |
Stem-loop(if miRNA) |
A    C                 C             U     G   AACCCCAA       - UCGACCUAGUGGAGUCUCCAAGUUCUUUUGUUAAGGUGAGGAGACAUUACAAUCUAGCAAAA  CCAU GUAGGUCUCAUCUUUCU AGCCCCUUAUUGC UCCAU ACU        AGUUUGC U                                                              C  |||| ||||||||||||||||| ||||||||||||| ||||| |||        ||||||| |  GGUG CAUCCAGGGUAGAAAGA UCGGGGAAUAACG AGGUA UGG        UGUUGGC G                                                              A G    C                 U             U     G   --------       U GUGGCGUCAACAAAAGAACUCGGACGAGGUUAGAUGAAGAAACGGUAGAGAGAUGUUGUUGA |
Stem-loop sequence | ACCAUCGUAGGUCUCAUCUUUCUCAGCCCCUUAUUGCUUCCAUGACUAACCCCAAAGUUUGCUUCGACCUAGUGGAGUCUCCAAGUUCUUUUGUUAAGGUGAGGAGACAUUACAAUCUAGCAAAACAAGUUGUUGUAGAGAGAUGGCAAAGAAGUAGAUUGGAGCAGGCUCAAGAAAACAACUGCGGUGGUCGGUUGUGGUGAUGGAUGCAAUAAGGGGCUUAGAAAGAUGGGACCUACCGUGGG |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |