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BaseInfo

ncRNA ID	gra-miR8709a
Species	Gossypium raimondii
Class	miRNA
Genome position	chr7:25000323-25000701 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AUAUUAAAACUAUACAUGAACUUU - 34
Stem-loop(if miRNA)	UUAAGA            AC               A  CAC    C   C C      U      AA     -  UG   U    UA        UGUU    UUC    UUCAUAAAU      U --AUAA      - --U  C    UAGCAUCAUUUUACAUGCAUGUAUUGCAUACACAAACAAUUAU       AUAAAUAUUAAA  UAUACAUGAACUUUG UC   UGUG AAU U AUACAU AACUUU  AUUUG UG  AUU UAUA  UGAAAUUU    UUGA   AAUU         CAUAAA C      ACAGCA U   GU AAAU                                           A       ||||||||||||  ||||||||||||||| ||   |||| ||| | |||||| ||||||  ||||| ||  ||| ||||  ||||||||    ||||   ||||         |||||| |      |||||| |   || ||||       UAUUUAUAGUUU  AUAUGUAUUUGAAAC AG   ACAC UUA A UAUGUA UUGAAA  UAAAC AC  UAA AUGU  ACUUUAAA    AACU   UUAA         GUAUUU G      AACGUA G   AC AUGU                                           U UAACCC            AA               C  AUU    A   A C      C      -C     C  GU   U    GC        -UUU    --C    UAUACAUAU      U AAACUA      A AUA  -    AUAAAUUUCUUUUUUUAUGUAUGUAAACAAAAAUAUAACUUAU
Stem-loop sequence	UUAAGAAUAAAUAUUAAAACUAUACAUGAACUUUGAUCCACUGUGCAAUCUCAUACAUUAACUUUAAAUUUGUGUGAUUUUAUAUAUGAAAUUUUGUUUUGAUUCAAUUUUCAUAAAUCAUAAAUCAUAAACAGCAUUGUCAAAUUAGCAUCAUUUUACAUGCAUGUAUUGCAUACACAAACAAUUAUAUUAUUCAAUAUAAAAACAAAUGUAUGUAUUUUUUUCUUUAAAUAUGUACAAUAGAAUGCAAAUCAAAGUUUUAUGUAUACAUAUAAUUCUCAAUUUAAAUUUCACGUGUAUAAUUGCACCAAAUCAAAGUUCAUGUAUCAAAUUACACAUUAGACCAAAGUUUAUGUAUAAAUUUGAUAUUUAUCCCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012624536.1	ncRNA:24   UUUCAAGUACAUAUCAAAAUUAUA   1   *|=|||*||*|||||||||||||| targets:3579   CAGGUUAAUAUAUAGUUUUAAUAU   3602 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii calmodulin-binding transcription activator 2-like (LOC105795074), transcript variant X1, mRNA	calmodulin-binding transcription activator 2-like(LOC105795074)	coding protein	psRNATarget
XM_012624539.1	ncRNA:24   UUUCAAGUACAUAUCAAAAUUAUA   1   *|=|||*||*|||||||||||||| targets:3576   CAGGUUAAUAUAUAGUUUUAAUAU   3599 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii calmodulin-binding transcription activator 2-like (LOC105795074), transcript variant X5, mRNA	calmodulin-binding transcription activator 2-like(LOC105795074)	coding protein	psRNATarget
XM_012624540.1	ncRNA:24   UUUCAAGUACAUAUCAAAAUUAUA   1   *|=|||*||*|||||||||||||| targets:3570   CAGGUUAAUAUAUAGUUUUAAUAU   3593 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii calmodulin-binding transcription activator 2-like (LOC105795074), transcript variant X6, mRNA	calmodulin-binding transcription activator 2-like(LOC105795074)	coding protein	psRNATarget
XM_012624541.1	ncRNA:24   UUUCAAGUACAUAUCAAAAUUAUA   1   *|=|||*||*|||||||||||||| targets:3569   CAGGUUAAUAUAUAGUUUUAAUAU   3592 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii calmodulin-binding transcription activator 2-like (LOC105795074), transcript variant X7, mRNA	calmodulin-binding transcription activator 2-like(LOC105795074)	coding protein	psRNATarget
XM_012624542.1	ncRNA:24   UUUCAAGUACAUAUCAAAAUUAUA   1   *|=|||*||*|||||||||||||| targets:3566   CAGGUUAAUAUAUAGUUUUAAUAU   3589 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii calmodulin-binding transcription activator 2-like (LOC105795074), transcript variant X8, mRNA	calmodulin-binding transcription activator 2-like(LOC105795074)	coding protein	psRNATarget
XM_012624537.1	ncRNA:24   UUUCAAGUACAUAUCAAAAUUAUA   1   *|=|||*||*|||||||||||||| targets:3494   CAGGUUAAUAUAUAGUUUUAAUAU   3517 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii calmodulin-binding transcription activator 2-like (LOC105795074), transcript variant X2, mRNA	calmodulin-binding transcription activator 2-like(LOC105795074)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).