| ncRNA ID | gra-miR8709b |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr7:23636490-23636847 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - UCAUGUAUAAUUUUGAGAUUUGUC - 34 |
| Stem-loop(if miRNA) |
AUCUUU - U C U C GA A AUUUCAUUUUCA - UAUUA A ----- UU AUAACAUCAUUUUAUGUUUAUAUAUUUCAUGCACAAAUAACUAUAUUUAUACAAUAAAAAAGGUAAUGUGA AUGGGAUAA UCUUAAAAUUAUACAU AA UUUA UUUA UGUGUAAUUUUAUACAU AAUUUU AUUUG CAAU U ACACG U UA GAU U ||||||||| |||||||||||||||| || |||| |||| ||||||||||||||||| |||||| ||||| |||| | ||||| | || ||| UACUCUGUU AGAGUUUUAAUAUGUA UU AAAU AAGU ACACAUUAAAAUAUGUA UUAAAA UAAAC UCAA A UAUAU A AA ACU G UAUUUU U C A U U -A C --------CACA U ----- - CUUUG -- GAAACCAAGUUUAUAUAUAUGUAUUUUGAAAUUAUAACUAAGUUAAUAUAUGUGUAAAAUUUUUUAUUUAU |
| Stem-loop sequence | AUCUUUAUGGGAUAAUCUUAAAAUUAUACAUUAACUUUAUUUUACUGUGUAAUUUUAUACAUGAAAUUUUAAUUUGAUUUCAUUUUCACAAUUUAUUAACACGAUUAUUGAUAUAACAUCAUUUUAUGUUUAUAUAUUUCAUGCACAAAUAACUAUAUUUAUACAAUAAAAAAGGUAAUGUGAUGUAUUUAUUUUUUAAAAUGUGUAUAUAAUUGAAUCAAUAUUAAAGUUUUAUGUAUAUAUAUUUGAACCAAAGUCAAAGUUUCAUAUAUAUAACUACACCAAAUCAAAAUUAAUGUAUAAAAUUACACAUUGAAUUAAAAUUCAUGUAUAAUUUUGAGAUUUGUCUCAUUUUUAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012599074.1 |
|
2.5 | PREDICTED: Gossypium raimondii cytosolic endo-beta-N-acetylglucosaminidase-like (LOC105776432), mRNA | cytosolic endo-beta-N-acetylglucosaminidase-like(LOC105776432) | coding protein | psRNATarget | |||||||||
| XM_012599535.1 |
|
2.5 | PREDICTED: Gossypium raimondii plasma membrane ATPase 4-like (LOC105776690), mRNA | plasma membrane ATPase 4-like(LOC105776690) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |