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BaseInfo

ncRNA ID gra-miR8639h
Species Gossypium raimondii
Class miRNA
Genome position chr7:20243037-20243238 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - UAAACAUAAGUAGAAUUAAACAAG - 34
Stem-loop(if miRNA) G                                                 -------  C   --      -  UU UUUUUGUCUAAAUUUUUUUAUAUUUUUCAA
 UAAUGGAAGACUUGUUUAAUUCUACUUAUGUUUAACAAUUCUUUUAAGU       GA AAA  UAUGAA AG  G                              A
 |||||||||||||||||||||||||||||||||||||||||||||||||       || |||  |||||| ||  |
 AUUACCUUCUGAACAAAUUAAGAUGAAUACAAAUUGUUGAGAAAAUUCG       UA UAU  UUAGUC AA  A                              U
-                                                 AAGGUUA  -   GA      U  -- AUCAUUACUUUGACUGAAAAUAUAAAUUAG
Stem-loop sequence GUAAUGGAAGACUUGUUUAAUUCUACUUAUGUUUAACAAUUCUUUUAAGUGACAAAUAUGAAAGUUGUUUUUGUCUAAAUUUUUUUAUAUUUUUCAAAUGAUUAAAUAUAAAAGUCAGUUUCAUUACUAAAAUCUGAUUAGUAUAUAUUGGAAGCUUAAAAGAGUUGUUAAACAUAAGUAGAAUUAAACAAGUCUUCCAUUA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).