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BaseInfo

ncRNA ID	gra-miR8750
Species	Gossypium raimondii
Class	miRNA
Genome position	chr7:13744384-13744576 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - UCUUAGUUGGCAUAUACUCAAGGA - 34
Stem-loop(if miRNA)	-      A           G            G    A              AAGCA   CAGAGUGAAGCAUGUGUCCAGCAUGCCUGAAGUCCGCU  AAGGCC UGGUCUUAGUU GCAUAUACUCAA GAGC CGCAGAAGGGAGAC     ACC                                      C  |||||| ||||||||||| |||||||||||| |||| ||||||||||||||     |||                                      A  UUCUGG GCCAGAGUCAA CGUAUAUGAGUU CUCG GCGUCUUCCCUCUG     GUG                                      G C      C           G            A    A              -----   AAAAGUACUGAACUGGGUAAAAAGAAUCCUGACUGUAA
Stem-loop sequence	AAGGCCAUGGUCUUAGUUGGCAUAUACUCAAGGAGCACGCAGAAGGGAGACAAGCAACCCAGAGUGAAGCAUGUGUCCAGCAUGCCUGAAGUCCGCUCAGAAUGUCAGUCCUAAGAAAAAUGGGUCAAGUCAUGAAAAGUGGUCUCCCUUCUGCGAGCUCAUUGAGUAUAUGCGAACUGAGACCGCGGUCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012585165.1	ncRNA:24   AGGAACUCAUAUACGGUUGAUUCU   1   ||=*|||||*||||||||*||||| targets:1582   UCUAUGAGUUUAUGCCAAAUAAGA   1605 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cysteine-rich receptor-like protein kinase 19 (LOC105765866), mRNA	cysteine-rich receptor-like protein kinase 19(LOC105765866)	coding protein	psRNATarget
XM_012585266.1	ncRNA:24   AGGAACUCAUAUACGGUUGAUUCU   1   ||=*|||||*||||||||*||||| targets:1803   UCUAUGAGUUUAUGCCAAAUAAGA   1826 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cysteine-rich receptor-like protein kinase 19 (LOC105765943), mRNA	cysteine-rich receptor-like protein kinase 19(LOC105765943)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).