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BaseInfo

ncRNA ID	gra-miR1446
Species	Gossypium raimondii
Class	miRNA
Genome position	chr7:3175703-3175832 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	21 - AACUCUCUCCCUCAAAGGCUA - 41
Stem-loop(if miRNA)	--CA     C      A  AC    U     -      A        UG UAU UG AUAU    A     AGGGA CCAACA UC  UAAC CUCUC CCUCAA GGCUAUUC  G   A  G    GCAA U     ||||| |||||| ||  |||| ||||| |||||| ||||||||  |   |  |    ||||     UCUCU GGUUGU AG  AUUG GAGAG GGAGUU CCGAUGAG  U   U  U    UGUU C UCUG     C      A  AU    C     U      G        GU CAU GU -GAU    C
Stem-loop sequence	CAAGGGACCCAACAAUCACUAACUCUCUCCCUCAAAGGCUAUUCUGGUAUAUGGAUAUGCAAAUCCUUGUUAGUUGUUACUUGGAGUAGCCGUUGAGGUGAGAGCGUUAUAGAAUGUUGGCUCUCUGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012632167.1	ncRNA:21   AUCGGAAACUCCCUCUCUCAA   1   *|||||||||||||||||||| targets:913   AAGCCUUUGAGGGAGAGAGUU   933 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii DELLA protein RGL1-like (LOC105800821), mRNA	DELLA protein RGL1-like(LOC105800821)	coding protein	psRNATarget
XM_012612629.1	ncRNA:21   AUCGGAAACUCCCUCUCUCAA   1   *||||*||||||||||||||* targets:919   AAGCCAUUGAGGGAGAGAGUA   939 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii replication factor C subunit 3-like (LOC105786265), mRNA	replication factor C subunit 3-like(LOC105786265)	coding protein	psRNATarget
XM_012581426.1	ncRNA:21   AUCGGAA-ACUCCCUCUCUCAA   1   **|||||-|||||||||||||* targets:460   GUGCCUUCUGAGGGAGAGAGUG   481 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii tubby-like F-box protein 5 (LOC105763276), transcript variant X4, mRNA	tubby-like F-box protein 5(LOC105763276)	coding protein	psRNATarget
XM_012581424.1	ncRNA:21   AUCGGAA-ACUCCCUCUCUCAA   1   **|||||-|||||||||||||* targets:792   GUGCCUUCUGAGGGAGAGAGUG   813 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii tubby-like F-box protein 5 (LOC105763276), transcript variant X3, mRNA	tubby-like F-box protein 5(LOC105763276)	coding protein	psRNATarget
XM_012581422.1	ncRNA:21   AUCGGAA-ACUCCCUCUCUCAA   1   **|||||-|||||||||||||* targets:825   GUGCCUUCUGAGGGAGAGAGUG   846 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii tubby-like F-box protein 5 (LOC105763276), transcript variant X1, mRNA	tubby-like F-box protein 5(LOC105763276)	coding protein	psRNATarget
XM_012581423.1	ncRNA:21   AUCGGAA-ACUCCCUCUCUCAA   1   **|||||-|||||||||||||* targets:864   GUGCCUUCUGAGGGAGAGAGUG   885 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii tubby-like F-box protein 5 (LOC105763276), transcript variant X2, mRNA	tubby-like F-box protein 5(LOC105763276)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).