Search result

BaseInfo

ncRNA ID gra-miR8752
Species Gossypium raimondii
Class miRNA
Genome position chr7:465419-465657 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 209 - UGAUGGAGAUAGGUAUCUGCA - 229
Stem-loop(if miRNA) AC     A    A  G                      -    A AUA          ACA     AU       AAUUACA    -------CACC   --A     -U   U       AAG  GCU
  GUCUU AUUG UG AGAUAGGUAUCUGCAGGAUUUG AGAA G   UCUAUAUAGG   UGUGA  AUAAUAA       GGAG           CCG   GAUUC  ACC ACCAACC   GC   U
  ||||| |||| || |||||||||||||||||||||| |||| |   ||||||||||   |||||  |||||||       ||||           |||   |||||  ||| |||||||   ||
  CAGAA UGAC AC UCUAUUCAUAGACGUUUUGAGC UCUU C   AGAUAUAUUC   GCAUU  UAUUAUU       CCUC           GGC   CUGAG  UGG UGGUUGG   CG   U
UA     C    C  A                      C    C -AC          --C     CU       ------A    AAUAGACUUAC   CUG     UU   -       CUA  AAU
Stem-loop sequence ACGUCUUAAUUGAUGGAGAUAGGUAUCUGCAGGAUUUGAGAAAGAUAUCUAUAUAGGACAUGUGAAUAUAAUAAAAUUACAGGAGCACCCCGAGAUUCUACCUACCAACCAAGGCGCUUUUAAGCAUCGGUUGGUGGUUUGAGUCGUCCGGCAUUCAGAUAACUCCAUUAUUAUUCUUACGCCUUAUAUAGACACCUUCUCCGAGUUUUGCAGAUACUUAUCUACACCAGUCAAGACAU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).