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BaseInfo

ncRNA ID	gra-miR7484n
Species	Gossypium raimondii
Class	miRNA
Genome position	chr6:49675651-49675852 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	169 - CUAGUUUGCUCUUUGAUCUAAUGU - 192
Stem-loop(if miRNA)	UA     -C                C          AUAUC  UAAAAAAUUUCAUCCAAUUGUACUGUUAAAAACUUGUGUGGCUAACAGAAAUAACCAAU   GUCCU  UACAUUAGAUCAAAGA UAAAUUGGUC     UG                                                           U   |||||  |||||||||||||||| ||||||||||     ||                                                           A   UAGGA  AUGUAAUCUAGUUUCU GUUUGAUCAG     UC                                                           G AC     AC                C          ----G  ACCAGGAAAACGAAUUUUAAAGUAAAUAAAAAUUCCAUGUACACCGUUCGGUAUACAGU
Stem-loop sequence	UAGUCCUCUACAUUAGAUCAAAGACUAAAUUGGUCAUAUCUGUAAAAAAUUUCAUCCAAUUGUACUGUUAAAAACUUGUGUGGCUAACAGAAAUAACCAAUUAGUGACAUAUGGCUUGCCACAUGUACCUUAAAAAUAAAUGAAAUUUUAAGCAAAAGGACCACUGGACUAGUUUGCUCUUUGAUCUAAUGUACAAGGAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012613783.1	ncRNA:24   UGUAAUCUAGUUUCUCGUUUGAUC   1   =*=||||||=|||||||||||||| targets:1536   GAGUUAGAUUAAAGAGCAAACUAG   1559 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii serine acetyltransferase 4-like (LOC105787406), mRNA	serine acetyltransferase 4-like(LOC105787406)	coding protein	psRNATarget
XM_012613878.1	ncRNA:24   UGUA--AUCUAGUUUCUCGUUUGAUC   1   |=||--||||||||||||||||||=| targets:1120   AUAUCUUAGAUCAAAGAGCAAACUGG   1145 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105787451 (LOC105787451), mRNA	uncharacterized LOC105787451(LOC105787451)	coding protein	psRNATarget
XM_012582316.1	ncRNA:24   UGUAAUCUAGUUUCUCGUUUGAUC   1   |==||||||||||||||||||*|| targets:1589   AUGUUAGAUCAAAGAGCAAACGAG   1612 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii E3 ubiquitin-protein ligase SINAT3 (LOC105763908), mRNA	E3 ubiquitin-protein ligase SINAT3(LOC105763908)	coding protein	psRNATarget
XM_012627936.1	ncRNA:24   UGUAAUCUAGUUUCUCGUUUGAUC   1   ||||||||*|||||||||||=||| targets:1169   ACAUUAGACCAAAGAGCAAAUUAG   1192 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii SAL1 phosphatase-like (LOC105798049), transcript variant X3, mRNA	SAL1 phosphatase-like(LOC105798049)	coding protein	psRNATarget
XM_012605166.1	ncRNA:24   UGUAAUCUAGUUUCUCGUUUGAUC   1   *|||||*|||||||||||||||=| targets:1256   CCAUUAAAUCAAAGAGCAAACUGG   1279 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X3, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012605165.1	ncRNA:24   UGUAAUCUAGUUUCUCGUUUGAUC   1   *|||||*|||||||||||||||=| targets:1316   CCAUUAAAUCAAAGAGCAAACUGG   1339 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X2, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012624805.1	ncRNA:24   UGUAAUCUAGUUUCUCGUUUGAUC   1   |==||||||*|||||*|||||||| targets:1588   AUGUUAGAUAAAAGAACAAACUAG   1611 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable carboxylesterase 7 (LOC105795259), transcript variant X2, mRNA	probable carboxylesterase 7(LOC105795259)	coding protein	psRNATarget
XM_012594132.1	ncRNA:24   UGUA--AUCUAGUUUCUCGUUUGAUC   1   ||||--||*||||||||*|||||||| targets:753   ACAUGCUACAUCAAAGAACAAACUAG   778 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable inactive receptor kinase At5g58300 (LOC105772715), transcript variant X2, mRNA	probable inactive receptor kinase At5g58300(LOC105772715)	coding protein	psRNATarget
XM_012594131.1	ncRNA:24   UGUA--AUCUAGUUUCUCGUUUGAUC   1   ||||--||*||||||||*|||||||| targets:838   ACAUGCUACAUCAAAGAACAAACUAG   863 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable inactive receptor kinase At5g58300 (LOC105772715), transcript variant X1, mRNA	probable inactive receptor kinase At5g58300(LOC105772715)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).