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BaseInfo

ncRNA ID	gra-miR167c
Species	Gossypium raimondii
Class	miRNA
Genome position	chr6:48890368-48890469 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - UCAGAUGAAGCUGCCAGCAUGA - 32
Stem-loop(if miRNA)	-   -UC  U  U   A           G        U A   C    UGU  UGC   CA CA CAG UGAAGCUGCCA CAUGAUCU A UUU CCUC   U  |||   || || ||| ||||||||||| |||||||| | ||| ||||   U  ACG   GU GU GUC ACUUUGACGGU GUACUAGA U AAA GGAG   U C   UUC  C  U   C           -        C A   A    CUA
Stem-loop sequence	UGCUCCAUCAUCAGAUGAAGCUGCCAGCAUGAUCUUAAUUUCCCUCUGUUUUAUCGAGGAAAAAUCAGAUCAUGUGGCAGUUUCACCUGUUGCUGCUUGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012609222.1	ncRNA:22   AGUACGACCGUCGAAGUAGACU   1   *||||*||||||||||||=||| targets:952   ACAUGGUGGCAGCUUCAUUUGA   973 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cytochrome P450 CYP736A12-like (LOC105783648), transcript variant X2, mRNA	cytochrome P450 CYP736A12-like(LOC105783648)	coding protein	psRNATarget
XM_012609221.1	ncRNA:22   AGUACGACCGUCGAAGUAGACU   1   *||||*||||||||||||=||| targets:977   ACAUGGUGGCAGCUUCAUUUGA   998 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cytochrome P450 CYP736A12-like (LOC105783648), transcript variant X1, mRNA	cytochrome P450 CYP736A12-like(LOC105783648)	coding protein	psRNATarget
XM_012625703.1	ncRNA:22   AGUACGACCGUCGAAGUAGACU   1   ||*|||||*||||||||||*|| targets:507   UCCUGCUGCCAGCUUCAUCAGA   528 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii histone H3-like centromeric protein HTR12 (LOC105796043), transcript variant X5, mRNA	histone H3-like centromeric protein HTR12(LOC105796043)	coding protein	psRNATarget
XM_012625698.1	ncRNA:22   AGUACGACCGUCGAAGUAGACU   1   ||*|||||*||||||||||*|| targets:512   UCCUGCUGCCAGCUUCAUCAGA   533 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii histone H3-like centromeric protein HTR12 (LOC105796043), transcript variant X4, mRNA	histone H3-like centromeric protein HTR12(LOC105796043)	coding protein	psRNATarget
XM_012625692.1	ncRNA:22   AGUACGACCGUCGAAGUAGACU   1   ||*|||||*||||||||||*|| targets:554   UCCUGCUGCCAGCUUCAUCAGA   575 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii histone H3-like centromeric protein HTR12 (LOC105796043), transcript variant X3, mRNA	histone H3-like centromeric protein HTR12(LOC105796043)	coding protein	psRNATarget
XM_012625689.1	ncRNA:22   AGUACGACCGUCGAAGUAGACU   1   ||*|||||*||||||||||*|| targets:561   UCCUGCUGCCAGCUUCAUCAGA   582 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii histone H3-like centromeric protein HTR12 (LOC105796043), transcript variant X2, mRNA	histone H3-like centromeric protein HTR12(LOC105796043)	coding protein	psRNATarget
XM_012625684.1	ncRNA:22   AGUACGACCGUCGAAGUAGACU   1   ||*|||||*||||||||||*|| targets:558   UCCUGCUGCCAGCUUCAUCAGA   579 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii histone H3-like centromeric protein HTR12 (LOC105796043), transcript variant X1, mRNA	histone H3-like centromeric protein HTR12(LOC105796043)	coding protein	psRNATarget
XM_012626220.1	ncRNA:22   AGUACGACCGUCGAAGUAGACU   1   **=||*|||||||||||||*|| targets:266   AGGUGGUGGCAGCUUCAUCGGA   287 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/arginine repetitive matrix protein 2-like (LOC105796491), transcript variant X3, mRNA	serine/arginine repetitive matrix protein 2-like(LOC105796491)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).