ncRNA ID | gra-miR8762a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr6:47375019-47375276 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 225 - UUAACAUUUGUUAACUUUGCUGAC - 248 |
Stem-loop(if miRNA) |
-                       A     C   C       C  C    AUU    ---   UA      CAUCAA   A           UU   UU       A   C       UU   AAAA       A  GAUGGAUAAGUUAACAUUUGUUA CUUUG UGA GUGGCAU UA GUGG   GUCU   UGU  AUGUCA      CAG UAAUUAAUUUU  AAA  UUAAAAA AUU AAAAAAU  AUU    UUAUUUA A  ||||||||||||||||||||||| ||||| ||| ||||||| || ||||   ||||   |||  ||||||      ||| |||||||||||  |||  ||||||| ||| |||||||  |||    ||||||| A  UUAUCUAUUUAAUUGUAGACAAU GGAAC ACU CAUCGUA GU CACC   CAGG   ACA  UACGGU      GUU AUUAAUUAAAA  UUU  AAUUUUU UAA UUUUUUG  UAA    AAUAAAU A U                       -     A   A       A  A    -GU    UGU   --      ACAUUC   A           UU   UU       A   -       --   ----       U |
Stem-loop sequence | GAUGGAUAAGUUAACAUUUGUUAACUUUGCUGACGUGGCAUCUACGUGGAUUGUCUUGUUAAUGUCACAUCAACAGAUAAUUAAUUUUUUAAAUUUUAAAAAAAUUCAAAAAAUUUAUUAAAAUUAUUUAAAAAUUAAAUAAAAUGUUUUUUAAUAUUUUUAAUUUUUUUAAAAUUAAUUAAUUGCUUACAUGGCAUACAUGUGGACUGCCACAUGAAUGCUACAUCAACAAGGUAACAGAUGUUAAUUUAUCUAUUU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |