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BaseInfo

ncRNA ID gra-miR8762a
Species Gossypium raimondii
Class miRNA
Genome position chr6:47375019-47375276 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 225 - UUAACAUUUGUUAACUUUGCUGAC - 248
Stem-loop(if miRNA) -                       A     C   C       C  C    AUU    ---   UA      CAUCAA   A           UU   UU       A   C       UU   AAAA       A
 GAUGGAUAAGUUAACAUUUGUUA CUUUG UGA GUGGCAU UA GUGG   GUCU   UGU  AUGUCA      CAG UAAUUAAUUUU  AAA  UUAAAAA AUU AAAAAAU  AUU    UUAUUUA A
 ||||||||||||||||||||||| ||||| ||| ||||||| || ||||   ||||   |||  ||||||      ||| |||||||||||  |||  ||||||| ||| |||||||  |||    ||||||| A
 UUAUCUAUUUAAUUGUAGACAAU GGAAC ACU CAUCGUA GU CACC   CAGG   ACA  UACGGU      GUU AUUAAUUAAAA  UUU  AAUUUUU UAA UUUUUUG  UAA    AAUAAAU A
U                       -     A   A       A  A    -GU    UGU   --      ACAUUC   A           UU   UU       A   -       --   ----       U
Stem-loop sequence GAUGGAUAAGUUAACAUUUGUUAACUUUGCUGACGUGGCAUCUACGUGGAUUGUCUUGUUAAUGUCACAUCAACAGAUAAUUAAUUUUUUAAAUUUUAAAAAAAUUCAAAAAAUUUAUUAAAAUUAUUUAAAAAUUAAAUAAAAUGUUUUUUAAUAUUUUUAAUUUUUUUAAAAUUAAUUAAUUGCUUACAUGGCAUACAUGUGGACUGCCACAUGAAUGCUACAUCAACAAGGUAACAGAUGUUAAUUUAUCUAUUU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).