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BaseInfo

ncRNA ID	gra-miR8771e
Species	Gossypium raimondii
Class	miRNA
Genome position	chr6:46011896-46012143 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - GGCAUUUAAAACACAUUUGGACUG - 34
Stem-loop(if miRNA)	A     UA  U           A                 AAA          A           G          AAUAA        A  UAAAAAUUUUAAAUUAAUUACAUUUUGAAAUGAA  UCUUA  UG CAGUCCAAAUG GUUUUAAAUGCCAACUU   UGUCCAAUUG GAUGAGAAUAA UUUUUAAUUA     AAUUAAUU AA                                  A  |||||  || ||||||||||| |||||||||||||||||   |||||||||| ||||||||||| ||||||||||     |||||||| ||                                  A  AGGAU  AU GUCAGGUUUAC CAAAAUUUACGGUUGAA   ACAGGUUAAC CUACUCUUAUU AAAAGUUAGU     UUUACUUU UU                                  A -     GC  C           A                 GCA          C           A          -----        -  CUUUUGAUUUUCUUUUUUCUCUGUUUGUUUAAAA
Stem-loop sequence	AUCUUAUAUGUCAGUCCAAAUGAGUUUUAAAUGCCAACUUAAAUGUCCAAUUGAGAUGAGAAUAAGUUUUUAAUUAAAUAAAAUUAAUUAAAUAAAAAUUUUAAAUUAAUUACAUUUUGAAAUGAAAAAAAAAUUUGUUUGUCUCUUUUUUCUUUUAGUUUUCUUUUUCAUUUUGAUUGAAAAAUUAUUCUCAUCCCAAUUGGACAACGAAGUUGGCAUUUAAAACACAUUUGGACUGCUACGUAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012628940.1	ncRNA:24   GUCAGGUUUACACAAAAUUUACGG   1   ||*|=||||||*|||||||||||| targets:24   CAAUUCAAAUGGGUUUUAAAUGCC   47 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X5, mRNA	QWRF motif-containing protein 8-like(LOC105798736)	coding protein	psRNATarget
XM_012582924.1	ncRNA:24   GUCAGGUUUACACAAAAUUUACGG   1   |||||=|||||*|||||||||||| targets:3547   CAGUCUAAAUGAGUUUUAAAUGCC   3570 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At2g02150 (LOC105764382), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At2g02150(LOC105764382)	coding protein	psRNATarget
XM_012582923.1	ncRNA:24   GUCAGGUUUACACAAAAUUUACGG   1   |||||=|||||*|||||||||||| targets:3610   CAGUCUAAAUGAGUUUUAAAUGCC   3633 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At2g02150 (LOC105764382), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At2g02150(LOC105764382)	coding protein	psRNATarget
XM_012582925.1	ncRNA:24   GUCAGGUUUACACAAAAUUUACGG   1   |||||=|||||*|||||||||||| targets:3700   CAGUCUAAAUGAGUUUUAAAUGCC   3723 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At2g02150 (LOC105764382), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At2g02150(LOC105764382)	coding protein	psRNATarget
XM_012582922.1	ncRNA:24   GUCAGGUUUACACAAAAUUUACGG   1   |||||=|||||*|||||||||||| targets:3811   CAGUCUAAAUGAGUUUUAAAUGCC   3834 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At2g02150 (LOC105764382), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At2g02150(LOC105764382)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).