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BaseInfo

ncRNA ID	ath-miR4243
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:19567208-19567386 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - UUGAAAUUGUAGAUUUCGUAC - 40
Stem-loop(if miRNA)	-------------------          ----      C                    U      C   AAUU     -------GA   U   -UU    GA                    AAAGAACCGU    GAAUUA AGUUGAAAUUGUAGAUUUCG ACAUGA AAU    UGCUC         GCA CAC   UCAU  U                    ||||||||||    |||||| |||||||||||||||||||| |||||| |||    |||||         ||| |||   ||||                    UUUCUUGGUA    UUUAAU UCAAUUUUAGCAUCUAAAGC UGUACU UUA    ACGAG         CGU GUG   GGUG  U UAGGGAGACAUUAACUUUA          GGUU      C                    U      -   -CAU     AGUUUAUGC   U   UCU    UU
Stem-loop sequence	AAAGAACCGUGAAUUACAGUUGAAAUUGUAGAUUUCGUACAUGACAAUAAUUUGCUCGAGCAUCACUUUCAUGAUUUUGUGGUCUGUGUUGCCGUAUUUGAGAGCAUACAUUUCAUGUUCGAAAUCUACGAUUUUAACUCUAAUUUUUGGAUGGUUCUUUAUUUCAAUUACAGAGGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_124203.1	ncRNA:21   CAUGCUUUAGAUGUUAAAGUU   1   ||||||||||||||||||||| targets:255   GUACGAAAUCUACAAUUUCAA   275 Target Full Sequence	0.0	Arabidopsis thaliana transmembrane protein partial mRNA	transmembrane protein(AT5G48280)	coding protein	psRNATarget
NM_112879.1	ncRNA:21   CAUGCUUUAGAUGUUAAAGUU   1   *||||||=|=||||||||||| targets:492   CUACGAAGUUUACAAUUUCAA   512 Target Full Sequence	2.5	Arabidopsis thaliana F-box family protein partial mRNA	F-box family protein(AT3G19890)	coding protein	psRNATarget
DQ056598.1	ncRNA:21   CAUGCUUUAGAUGUUAAAGUU   1   *||||||=|=||||||||||| targets:492   CUACGAAGUUUACAAUUUCAA   512 Target Full Sequence	2.5	Arabidopsis thaliana F-box family protein (At3g19890) mRNA, complete cds	NA	coding protein	psRNATarget
NM_112236.1	ncRNA:21   CAUGCUUUAGAUGUUAAAGUU   1   *||=||||||||||=|||||| targets:516   UUAUGAAAUCUACAGUUUCAA   536 Target Full Sequence	2.5	Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA	F-box and associated interaction domains-containing protein(AT3G13830)	coding protein	psRNATarget
NM_129747.5	ncRNA:21   CAUGCUUUAGAUGUUAAAGUU   1   *|||*|||||||||||*|||| targets:1902   AUACCAAAUCUACAAUAUCAA   1922 Target Full Sequence	2.5	Arabidopsis thaliana Uncharacterized protein mRNA	hypothetical protein(AT2G41830)	coding protein	psRNATarget
AK228642.1	ncRNA:21   CAUGCUUUAGAUGUUAAAGUU   1   *|||*|||||||||||*|||| targets:1859   AUACCAAAUCUACAAUAUCAA   1879 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-48-K17	NA	coding protein	psRNATarget
NM_001336937.1	ncRNA:21   CAUGCUUUAGAUGUUAAAGUU   1   *|||*|||||||||||*|||| targets:1116   AUACCAAAUCUACAAUAUCAA   1136 Target Full Sequence	2.5	Arabidopsis thaliana Uncharacterized protein mRNA	hypothetical protein(AT2G41830)	coding protein	psRNATarget

Reference

1	PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"; Ma Z, Coruh C, Axtell MJ; Plant Cell. 22:1090-1103(2010).