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BaseInfo

ncRNA ID	gra-miR8634
Species	Gossypium raimondii
Class	miRNA
Genome position	chr6:37108599-37108759 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	131 - UUGGUAUGGAGGAUGGAAAAG - 151
Stem-loop(if miRNA)	A    C   C                       UG A            A      A  A  CC   A  C    UCACU  AAGC UUG UUGGUAUGGAGGAUGGAAAAGAG  A GAUGGAAAAUUU UUAAUC AA GG  AAG UU ACAA     U  |||| ||| |||||||||||||||||||||||  | |||||||||||| |||||| || ||  ||| || ||||     U  UUCG AAC AACCAUGCUUCCUACCUUUUCUC  U CUAUCUUUUAAA AGUUAG UU CC  UUC AA UGUU     C A    A   A                       CA C            C      A  A  AA   -  -    UCAUC
Stem-loop sequence	AAAGCCUUGCUUGGUAUGGAGGAUGGAAAAGAGUGAAGAUGGAAAAUUUAUUAAUCAAAAGGCCAAGAUUCACAAUCACUUUCCUACUUUGUAACUUAACCAUUAGAUUGACAAAUUUUCUAUCCUACCUCUUUUCCAUCCUUCGUACCAAACAAAGCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012594160.1	ncRNA:21   GAAAAGGUAGGAGGUAUGGUU   1   |*|||=|||||||||*||||| targets:195   CAUUUUCAUCCUCCACACCAA   215 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cysteine proteinase inhibitor 3-like (LOC105772742), transcript variant X1, mRNA	cysteine proteinase inhibitor 3-like(LOC105772742)	coding protein	psRNATarget
XM_012594161.1	ncRNA:21   GAAAAGGUAGGAGGUAUGGUU   1   |*|||=|||||||||*||||| targets:195   CAUUUUCAUCCUCCACACCAA   215 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cysteine proteinase inhibitor 3-like (LOC105772742), transcript variant X2, mRNA	cysteine proteinase inhibitor 3-like(LOC105772742)	coding protein	psRNATarget
XM_012594162.1	ncRNA:21   GAAAAGGUAGGAGGUAUGGUU   1   |*|||=|||||||||*||||| targets:195   CAUUUUCAUCCUCCACACCAA   215 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cysteine proteinase inhibitor 3-like (LOC105772742), transcript variant X3, mRNA	cysteine proteinase inhibitor 3-like(LOC105772742)	coding protein	psRNATarget
XM_012594165.1	ncRNA:21   GAAAAGGUAGGAGGUAUGGUU   1   |*|||=|||||||||*||||| targets:195   CAUUUUCAUCCUCCACACCAA   215 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cysteine proteinase inhibitor 3-like (LOC105772742), transcript variant X5, mRNA	cysteine proteinase inhibitor 3-like(LOC105772742)	coding protein	psRNATarget
XM_012594166.1	ncRNA:21   GAAAAGGUAGGAGGUAUGGUU   1   |*|||=|||||||||*||||| targets:195   CAUUUUCAUCCUCCACACCAA   215 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cysteine proteinase inhibitor 3-like (LOC105772742), transcript variant X6, mRNA	cysteine proteinase inhibitor 3-like(LOC105772742)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).