| ncRNA ID | gra-miR8698 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr6:32137935-32138170 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 203 - AGGGACAAUUAACUUUAACGGUCA - 226 |
| Stem-loop(if miRNA) |
CG -AG A C -UA -----------------AAA CAU CAUAACCUCGGAGUGAUAUGUGGCAAAAAAAUUAUAAAAACUAUUAA UUAA UU ACUGUUAAAGUUGAUUG CUCUAAUUUUUUU GUU GUCAU GUGU A |||| || ||||||||||||||||| ||||||||||||| ||| ||||| |||| AAUU AA UGGCAAUUUCAAUUAAC GGGAUUAAAAAAA CAA AAAUU AUUU A GA GUA C A UGA AAAUGUAAAAAAAAGAUUAA --- AAAAUUUAAAAAAUAUAAAAAAUGAUUUAAAAUUAUUAAAAAUACUA |
| Stem-loop sequence | CGUUAAAGUUAACUGUUAAAGUUGAUUGCCUCUAAUUUUUUUUAGUUAAAGUCAUCAUGUGUCAUAACCUCGGAGUGAUAUGUGGCAAAAAAAUUAUAAAAACUAUUAAAAAUCAUAAAAAUUAUUAAAAUUUAGUAAAAAAUAUAAAAAAUUUAAAAUUUAUUAAAAAUUAGAAAAAAAAUGUAAAAACAGUAAAAAAAUUAGGGACAAUUAACUUUAACGGUCAAAUGUUAAAG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012614717.1 |
|
2.0 | PREDICTED: Gossypium raimondii CASP-like protein 3A2 (LOC105788037), transcript variant X2, mRNA | CASP-like protein 3A2(LOC105788037) | coding protein | psRNATarget | |||||||||
| XM_012614716.1 |
|
2.0 | PREDICTED: Gossypium raimondii CASP-like protein 3A2 (LOC105788037), transcript variant X1, mRNA | CASP-like protein 3A2(LOC105788037) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |