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BaseInfo

ncRNA ID	gra-miR8782
Species	Gossypium raimondii
Class	miRNA
Genome position	chr6:32090152-32090546 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUUGGUGUUGAAGGGGAAUAA - 31
Stem-loop(if miRNA)	UAU                                      CCUCUUACCAA     CCA     UUUUUU      AAAAGUAUUUUUGUAAAAUAGCCGAUUCCAA   -         UUUAUUUAUUUUUCAAAAAAAAAAAUUUGUCGUUCAAAUUAUGUCUAACAUAGCAGUUAAUGAUAUUCAUAGUAGUUUUCUUUUGCUCACAUUAUAUUUGG    UUUCUUUUUAUUCCCCUUCAACACCAAAAAUAGAGAGG           UUAGU   AAAAG      CUACUA                               UUG AAAAUAAAU                                                                                                     A    ||||||||||||||||||||||||||||||||||||||           |||||   |||||      ||||||                               ||| |||||||||                                                                                                     A    AAAGGAAAAUAAGGGGAAGUUGUGGUUUUUAUCUUUCC           AAAAA   GAUUU      UGAAAA                               UAU AAUAUUAAA                                                                                                     A AAU                                      -----------     ---     ------      -------------------------------   U         AUAAUAAUUAAACUAAAUGCAUGUACCAUAUUUUAAUAUUUAUAUUUUCGAGAUCUUUUUAAAAUAAUACAUAUUUAAUAUUAAAAAUCAAUUUAAAUAAC
Stem-loop sequence	UAUUUUCUUUUUAUUCCCCUUCAACACCAAAAAUAGAGAGGCCUCUUACCAAUUAGUCCAAAAAGUUUUUUCUACUAAAAAGUAUUUUUGUAAAAUAGCCGAUUCCAAUUGAAAAUAAAUUUUAUUUAUUUUUCAAAAAAAAAAAUUUGUCGUUCAAAUUAUGUCUAACAUAGCAGUUAAUGAUAUUCAUAGUAGUUUUCUUUUGCUCACAUUAUAUUUGGAAACAAUAAAUUUAACUAAAAAUUAUAAUUUAUACAUAAUAAAAUUUUUCUAGAGCUUUUAUAUUUAUAAUUUUAUACCAUGUACGUAAAUCAAAUUAAUAAUAAAAUUAUAAUUAUAAAAGUUUUAGAAAAACCUUUCUAUUUUUGGUGUUGAAGGGGAAUAAAAGGAAAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012585936.1	ncRNA:21   AAUAAGGGGAAGUUGUGGUUU   1   |||||||||||=||||||||| targets:3829   UUAUUCCCCUUUAACACCAAA   3849 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii disease resistance protein At4g27190-like (LOC105766461), transcript variant X2, mRNA	disease resistance protein At4g27190-like(LOC105766461)	coding protein	psRNATarget
XM_012605350.1	ncRNA:21   AAUAAGGGGAAGUUGUGGUUU   1   ||*|||||||||||||||||* targets:1306   UUCUUCCCCUUCAACACCAAC   1326 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii myb-like protein A (LOC105780827), mRNA	myb-like protein A(LOC105780827)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).