| ncRNA ID | ath-miR2939 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:19566960-19567084 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 79 - UAACGCACAACACUAAGCCAU - 99 |
| Stem-loop(if miRNA) |
GU --CC A U C A A U -- A A UGUCA GUU GUCU U ACU CGAUG CUUA UGUUGUGU UACCAAAGA AACAUA G ||||| ||| |||| | ||| ||||| |||| |||||||| ||||||||| |||||| G ACGGU CAA CAGA A UGA GCUAC GAAU ACAACACG AUGGUUUCU UUGUGU C -C AAAA - C U C C C CA G U |
| Stem-loop sequence | GUUGUCACCGUUAGUCUUUCACUACGAUGACUUAUUGUUGUGUUACCAAAGAAAACAUAAGGCUUGUGUUGUCUUUGGUAACGCACAACACUAAGCCAUCGCAGUUACAGACAACAAAAUGGCAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_112879.1 |
|
2.0 | Arabidopsis thaliana F-box family protein partial mRNA | F-box family protein(AT3G19890) | coding protein | psRNATarget | |||||||||
| DQ056598.1 |
|
2.0 | Arabidopsis thaliana F-box family protein (At3g19890) mRNA, complete cds | NA | coding protein | psRNATarget |
| 1 | PMID:20042113
"MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana"; Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H; BMC Genomics. 10:643(2009). |