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BaseInfo

ncRNA ID	gra-miR5741
Species	Gossypium raimondii
Class	miRNA
Genome position	chr6:2568464-2568613 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	120 - UAGUAUAAGGACUAAAUUGGU - 140
Stem-loop(if miRNA)	UAUUAC   A               U            U       C   -G       GAAUA     CAUUC       AUG AUCAAUUUAGUCCUU UACUAUUAAAAG AAUCAAA AAG  CAAAUUG     UAGAA     C       ||| ||||||||||||||| |||||||||||| ||||||| |||  |||||||     |||||     A       UAU UGGUUAAAUCAGGAA AUGAUAAUUUUC UUAGUUU UUU  GUUUGAC     AUCUU     A UAUCUC   C               U            C       A   AG       AUGAC     UUUUA
Stem-loop sequence	UAUUACAUGAAUCAAUUUAGUCCUUUUACUAUUAAAAGUAAUCAAACAAGGCAAAUUGGAAUAUAGAACAUUCCAAAUUUUUUCUACAGUACAGUUUGGAUUUAUUUGAUUCCUUUUAAUAGUAUAAGGACUAAAUUGGUCUAUCUCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012594918.1	ncRNA:21   UGGUUAAAUCAGGAAUAUGAU   1   |=|||*||||||||||||||| targets:994   AUCAAAUUAGUCCUUAUACUA   1014 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii transcription factor MYB44-like (LOC105773207), mRNA	transcription factor MYB44-like(LOC105773207)	coding protein	psRNATarget
XM_012582316.1	ncRNA:21   UGGUUAAAUCAGGAAUAUGAU   1   **=|||||||||||||||||| targets:1543   UGUAAUUUAGUCCUUAUACUA   1563 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii E3 ubiquitin-protein ligase SINAT3 (LOC105763908), mRNA	E3 ubiquitin-protein ligase SINAT3(LOC105763908)	coding protein	psRNATarget
XM_012603299.1	ncRNA:21   UGGUUAAAUCAGGAAUAUGAU   1   |=|||||||||||*||||||| targets:1155   AUCAAUUUAGUCCCUAUACUA   1175 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105779516 (LOC105779516), mRNA	uncharacterized LOC105779516(LOC105779516)	coding protein	psRNATarget
XM_012599844.1	ncRNA:21   UGGUUAAAUCAGGAAUAUGAU   1   ***|||||||||||||||||* targets:1558   UAAAAUUUAGUCCUUAUACUU   1578 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii probable pectate lyase 16 (LOC105776894), transcript variant X2, mRNA	probable pectate lyase 16(LOC105776894)	coding protein	psRNATarget
XM_012599843.1	ncRNA:21   UGGUUAAAUCAGGAAUAUGAU   1   ***|||||||||||||||||* targets:1554   UAAAAUUUAGUCCUUAUACUU   1574 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii probable pectate lyase 16 (LOC105776894), transcript variant X1, mRNA	probable pectate lyase 16(LOC105776894)	coding protein	psRNATarget
XM_012597405.1	ncRNA:21   UGGUUAAAUCAGGAAUAUGAU   1   ***|||||||||||||||||* targets:1398   UGGAAUUUAGUCCUUAUACUU   1418 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii gibberellin 2-beta-dioxygenase-like (LOC105774835), mRNA	gibberellin 2-beta-dioxygenase-like(LOC105774835)	coding protein	psRNATarget
XM_012579765.1	ncRNA:21   UGGUUAAAUCAGGAAUAUGAU   1   |=|||||*||||||||||=|| targets:2919   AUCAAUUCAGUCCUUAUAUUA   2939 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105761825 (LOC105761825), mRNA	uncharacterized LOC105761825(LOC105761825)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).