| ncRNA ID | gra-miR8666 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr6:911375-911770 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - UUGGUGAUCAUAAGUACAUAA - 31 |
| Stem-loop(if miRNA) |
GAU -GA G -- U -- A ------- AGGAGGGUCAUAAAGUGGCGUUCUUUAGAGCCAUCACUUCGUAUUUAUACAGCUUGUUGAAUACGCAGCGACCACCGAAACAUGACAUUAACUUUGCCACGUGUACAGGUGGAUCAAGCCUAUCUACAUUUGACC UUUC GUUGGU AUCAUAAGUACAUAACAA UCUAG CCC CCUAUU G GUCUA A |||| |||||| |||||||||||||||||| ||||| ||| |||||| | ||||| U AAAG CAAUCA UAGUAUUCAUGUAUUGUU GAUUU GGA CUGCUC C GUUCU U AUC ACC A UC U CU - UUCAAUU AAAUGGAACUUCUUUCGGAGUUAGCUCGGAUGAACAUCUUUUCAAUUUAAAUAUUCAAAUCCCAAAGAUUUUGGGGGAUAAAAUUUCUUCAAAAAGAAAGGGAACAAAACUACUAAGUUUAUUGGCUCCUCGUGU |
| Stem-loop sequence | GAUUUUCGAGUUGGUGAUCAUAAGUACAUAACAAUCUAGUCCCCCUAUUAGGUCUAAGGAGGGUCAUAAAGUGGCGUUCUUUAGAGCCAUCACUUCGUAUUUAUACAGCUUGUUGAAUACGCAGCGACCACCGAAACAUGACAUUAACUUUGCCACGUGUACAGGUGGAUCAAGCCUAUCUACAUUUGACCAUUUGUGCUCCUCGGUUAUUUGAAUCAUCAAAACAAGGGAAAGAAAAACUUCUUUAAAAUAGGGGGUUUUAGAAACCCUAAACUUAUAAAUUUAACUUUUCUACAAGUAGGCUCGAUUGAGGCUUUCUUCAAGGUAAAUCUUGUUAACUUCCUCGUCUCAGGUUUUAGCUUUGUUAUGUACUUAUGAUAACUAACCCAGAAACUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012584223.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105765231 (LOC105765231), transcript variant X1, mRNA | uncharacterized LOC105765231(LOC105765231) | coding protein | psRNATarget | |||||||||
| XM_012584224.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105765231 (LOC105765231), transcript variant X2, mRNA | uncharacterized LOC105765231(LOC105765231) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |