Search result

BaseInfo

ncRNA ID gra-miR8731
Species Gossypium raimondii
Class miRNA
Genome position chr5:64015349-64015789 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 411 - CUAUAAACAGUCGAUGGUAUC - 431
Stem-loop(if miRNA) UA        C                        UCUCUCUAA  -  ACCAC     - GGCUCAGGCGCUGAGCAAUGACUCCAAUGCCACUUUCGCAAACUUCUCGAGGCUGACCUAGCGGUUGUCCUGACAAAUGAGGUUAAGGAUCAGAAGAUCUUACAGAACUAUGUUUUCUAUCCCAACUUCUCUUACUAGGUGGAGGAGGAGGAGGGGGGGGGGUUAA
  UUUAUUUG UAUAAACAGUCGAUGGUAUCUCCA         UG CU     CAGGC C                                                                                                                                                                      U
  |||||||| ||||||||||||||||||||||||         || ||     ||||| |
  AGAUAAAC AUGUUUGUCAGCUACCGUAGAGGU         CU AG     GUUAC G                                                                                                                                                                      A
UA        A                        --------C  A  -----     U CUCGAAGCACUACGUCUUAGACGGACCGACACACAAUUCGUACAGUUUUUGUUACGAUAACAAUGUAGUUUCCAAUCAUUAUAAAACAAUGAACCUAUUUGGGUCUGAGACCAAAUUGACCACACGGAUUUACUAAAACAACUGUGUAAGAAUACUAUCAAUUAUU
Stem-loop sequence UAUUUAUUUGCUAUAAACAGUCGAUGGUAUCUCCAUCUCUCUAAUGCUACCACCAGGCCGGCUCAGGCGCUGAGCAAUGACUCCAAUGCCACUUUCGCAAACUUCUCGAGGCUGACCUAGCGGUUGUCCUGACAAAUGAGGUUAAGGAUCAGAAGAUCUUACAGAACUAUGUUUUCUAUCCCAACUUCUCUUACUAGGUGGAGGAGGAGGAGGGGGGGGGGUUAAUAUUAUUAACUAUCAUAAGAAUGUGUCAACAAAAUCAUUUAGGCACACCAGUUAAACCAGAGUCUGGGUUUAUCCAAGUAACAAAAUAUUACUAACCUUUGAUGUAACAAUAGCAUUGUUUUUGACAUGCUUAACACACAGCCAGGCAGAUUCUGCAUCACGAAGCUCGUCAUUGGAAUCCUGGAGAUGCCAUCGACUGUUUGUAACAAAUAGAAU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).