ncRNA ID | gra-miR8731 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr5:64015349-64015789 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 411 - CUAUAAACAGUCGAUGGUAUC - 431 |
Stem-loop(if miRNA) |
UA        C                        UCUCUCUAA  -  ACCAC     - GGCUCAGGCGCUGAGCAAUGACUCCAAUGCCACUUUCGCAAACUUCUCGAGGCUGACCUAGCGGUUGUCCUGACAAAUGAGGUUAAGGAUCAGAAGAUCUUACAGAACUAUGUUUUCUAUCCCAACUUCUCUUACUAGGUGGAGGAGGAGGAGGGGGGGGGGUUAA   UUUAUUUG UAUAAACAGUCGAUGGUAUCUCCA         UG CU     CAGGC C                                                                                                                                                                      U   |||||||| ||||||||||||||||||||||||         || ||     ||||| |   AGAUAAAC AUGUUUGUCAGCUACCGUAGAGGU         CU AG     GUUAC G                                                                                                                                                                      A UA        A                        --------C  A  -----     U CUCGAAGCACUACGUCUUAGACGGACCGACACACAAUUCGUACAGUUUUUGUUACGAUAACAAUGUAGUUUCCAAUCAUUAUAAAACAAUGAACCUAUUUGGGUCUGAGACCAAAUUGACCACACGGAUUUACUAAAACAACUGUGUAAGAAUACUAUCAAUUAUU |
Stem-loop sequence | UAUUUAUUUGCUAUAAACAGUCGAUGGUAUCUCCAUCUCUCUAAUGCUACCACCAGGCCGGCUCAGGCGCUGAGCAAUGACUCCAAUGCCACUUUCGCAAACUUCUCGAGGCUGACCUAGCGGUUGUCCUGACAAAUGAGGUUAAGGAUCAGAAGAUCUUACAGAACUAUGUUUUCUAUCCCAACUUCUCUUACUAGGUGGAGGAGGAGGAGGGGGGGGGGUUAAUAUUAUUAACUAUCAUAAGAAUGUGUCAACAAAAUCAUUUAGGCACACCAGUUAAACCAGAGUCUGGGUUUAUCCAAGUAACAAAAUAUUACUAACCUUUGAUGUAACAAUAGCAUUGUUUUUGACAUGCUUAACACACAGCCAGGCAGAUUCUGCAUCACGAAGCUCGUCAUUGGAAUCCUGGAGAUGCCAUCGACUGUUUGUAACAAAUAGAAU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |