| ncRNA ID | gra-miR166c |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr5:63621122-63621276 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 125 - UAUAUGAUCUCGGACCAGGCU - 145 |
| Stem-loop(if miRNA) |
G UU CU - AUCUUU AUU U UUUAU AUGGGAAUG GUUUGG CGAGGUCAUAUA GGUUG UAUAUAUA UCCA GAAAUUUUCUUGGA U ||||||||| |||||| |||||||||||| ||||| |||||||| |||| |||||||||||||| U UGCCCUUAC CGGACC GCUCUAGUAUAU CCGAU AUAUGUGU AGGU CUUUGAAAGGGCCU A - UU AG U --AUAU -AU - UUUAA |
| Stem-loop sequence | GAUGGGAAUGUUGUUUGGCUCGAGGUCAUAUAGGUUGAUCUUUUAUAUAUAAUUUCCAUGAAAUUUUCUUGGAUUUAUUUAAAUUUUCCGGGAAAGUUUCUGGAUAUGUGUAUAUAUAUAGCCUUAUAUGAUCUCGGACCAGGCUUCAUUCCCGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012581177.1 |
|
2.5 | PREDICTED: Gossypium raimondii glutamic acid-rich protein (LOC105763098), transcript variant X3, mRNA | glutamic acid-rich protein(LOC105763098) | coding protein | psRNATarget | |||||||||
| XM_012581176.1 |
|
2.5 | PREDICTED: Gossypium raimondii glutamic acid-rich protein (LOC105763098), transcript variant X2, mRNA | glutamic acid-rich protein(LOC105763098) | coding protein | psRNATarget | |||||||||
| XM_012581175.1 |
|
2.5 | PREDICTED: Gossypium raimondii glutamic acid-rich protein (LOC105763098), transcript variant X1, mRNA | glutamic acid-rich protein(LOC105763098) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |