ncRNA ID | gra-miR8643b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr5:63155058-63155206 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - ACAUAUUAAGAAGUCGAAUUG - 31 |
Stem-loop(if miRNA) |
AUA               A            A              G    ---------------AA U GAAAGCCAUC    UCUUUUAACAUAUUA GAAGUCGAAUUG CAGUGGAGAAAGAA UAUG                 G C          A    ||||||||||||||| |||||||||||| |||||||||||||| ||||                 | |          U    GGAAAAUUGUAUAGU CUUCAGCUUAAC GUUACUUCUUUCUU GUAC                 A A          U UAA               C            C              A    CAUGCCCAAAUACCCAA - CUAAUAUCUG |
Stem-loop sequence | AUAUCUUUUAACAUAUUAAGAAGUCGAAUUGACAGUGGAGAAAGAAGUAUGAAGUCGAAAGCCAUCAUUGUCUAUAAUCAAAACCCAUAAACCCGUACCAUGAUUCUUUCUUCAUUGCCAAUUCGACUUCCUGAUAUGUUAAAAGGAAU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |