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BaseInfo

ncRNA ID gra-miR8643b
Species Gossypium raimondii
Class miRNA
Genome position chr5:63155058-63155206 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - ACAUAUUAAGAAGUCGAAUUG - 31
Stem-loop(if miRNA) AUA               A            A              G    ---------------AA U GAAAGCCAUC
   UCUUUUAACAUAUUA GAAGUCGAAUUG CAGUGGAGAAAGAA UAUG                 G C          A
   ||||||||||||||| |||||||||||| |||||||||||||| ||||                 | |          U
   GGAAAAUUGUAUAGU CUUCAGCUUAAC GUUACUUCUUUCUU GUAC                 A A          U
UAA               C            C              A    CAUGCCCAAAUACCCAA - CUAAUAUCUG
Stem-loop sequence AUAUCUUUUAACAUAUUAAGAAGUCGAAUUGACAGUGGAGAAAGAAGUAUGAAGUCGAAAGCCAUCAUUGUCUAUAAUCAAAACCCAUAAACCCGUACCAUGAUUCUUUCUUCAUUGCCAAUUCGACUUCCUGAUAUGUUAAAAGGAAU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).