| ncRNA ID | ath-miR5665 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:19499055-19499533 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 39 - UUGGUGGACAAGAUCUGGGAU - 59 |
| Stem-loop(if miRNA) |
C UC UCU C A A UUC A UC A A U A - A UGCAUAUAAUUUUAUUUAAAUAAUAUGUUAUAUCAGAGACAAGUUCAUAUCGAAUGAGUAAUAAAAUCAGAUCAGGA UUGUUU GAUUUCAUCAUUUUUC AUUAUUAUGAAUUCCA AUCUUGUCUACCAAUUGUUUUCAUUUAA G UUUUGA UUAUUUAGAUUUUUCAC AUCUAUUUUGGU ACAGAUUAGUU AGCAUUAUUGUCUUC CC AC CG UUUAU AU A |||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| || || || ||||| || AACAGA CUAAAGUAGUAGAAAG UAAUAGUACUUAGGGU UAGAACAGGUGGUUAACAGGAGUAAAUU C AAAGCU AAUAAAUCUAAAAAGUG UAGAUAAAACCA UGUCUAAUCAA UCGUAAUAACAGAAG GG UG GC AAAUA CU C A GA UUU C C C UAA G GA C A C G U A AAAAAAAGAAAGAUAACGUUUUAUUGGUUUUUUAGUUCAAUAUAGUAUAAUAGAACAGAUGGUAAGCUAGACUUAAA |
| Stem-loop sequence | CUUGUUUUCGAUUUCAUCAUUUUUCUCUAUUAUUAUGAAUUCCACAUCUUGUCUACCAAUUGUUUUCAUUUAAAGAUUUUGAUUCUUAUUUAGAUUUUUCACAAUCUAUUUUGGUUCACAGAUUAGUUAAGCAUUAUUGUCUUCACCUACACGUUUAUAAUUGCAUAUAAUUUUAUUUAAAUAAUAUGUUAUAUCAGAGACAAGUUCAUAUCGAAUGAGUAAUAAAAUCAGAUCAGGAACAAAUUCAGAUCGAAUGGUAGACAAGAUAAUAUGAUAUAACUUGAUUUUUUGGUUAUUUUGCAAUAGAAAGAAAAAAAUCAAUAAAUCGGGUCGGAGAAGACAAUAAUGCUCAACUAAUCUGUAGACCAAAAUAGAUGGUGAAAAAUCUAAAUAAAAUUCGAAACCCUUAAAUGAGGACAAUUGGUGGACAAGAUCUGGGAUUCAUGAUAAUUUUGAAAGAUGAUGAAAUCAGAGACAAA |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |