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BaseInfo

ncRNA ID gra-miR8713
Species Gossypium raimondii
Class miRNA
Genome position chr5:59328455-59328633 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AUGACUGUUUUAAUGAAGAUUGCG - 34
Stem-loop(if miRNA) GAGA                  A                        GA    A         A               --A     CU
    UAAGUUAUGACUGUUUUA UGAAGAUUGCGCGAGUAAAAUUUC  GACG GAUUAUUAC AAAAUUAUGAGUUUU   AGCUU  A
    |||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||   |||||  A
    AUUCAAUACUGGUAAAAU ACUUCUAACGCGCUCAUUUUAAAG  CUGC CUAAUAAUG UUUUAAUACUCAAAG   UUGAG  U
AAAA                  C                        AC    C         C               AAC     CU
Stem-loop sequence GAGAUAAGUUAUGACUGUUUUAAUGAAGAUUGCGCGAGUAAAAUUUCGAGACGAGAUUAUUACAAAAAUUAUGAGUUUUAAGCUUCUAAUUCGAGUUCAAGAAACUCAUAAUUUUCGUAAUAAUCCCGUCCAGAAAUUUUACUCGCGCAAUCUUCACUAAAAUGGUCAUAACUUAAAAA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).