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BaseInfo

ncRNA ID gra-miR8721b
Species Gossypium raimondii
Class miRNA
Genome position chr5:56870471-56870850 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - CAUCGAUAGUUUGAGGAUGUA - 31
Stem-loop(if miRNA) AUGUUUUA        -                AA      U  AUCCUUCUAUC  UGAAACCGUUAAUUUUUUUCAUUAAAUGACAUGUACAAUCUUAUAUGACAUAAUUUAAAAUGAAAAUUUUAAAACGGUGCAUACCUUUUAAAAUUAAAACCUAAAAAUAAAAUAAAACCGAAAAAAAAAGUGAAUGA
        AUUACAUC UCAAAUUAUCGAUGUU  AUCAAU AG           AU                                                                                                                                         U
        |||||||| ||||||||||||||||  |||||| ||           ||
        UAAUGUAG AGUUUGAUAGCUACAA  UAGUUA UC           UG                                                                                                                                         A
UGUAUGAG        G                CA      U  ---------CA  AAAGCAAUGAUUUUAGUAAUUAAAUUUACAAUUUACUCUGUAGUCUAGAAUAUCCUGUAUUAAAUUUUACUUUGAAGAUUUCUUUUUAUUUACUACAUUUGUAGAACCAAAUUCCAAAAGCUUCGAAAAUGUCUUUA
Stem-loop sequence AUGUUUUAAUUACAUCUCAAAUUAUCGAUGUUAAAUCAAUUAGAUCCUUCUAUCAUUGAAACCGUUAAUUUUUUUCAUUAAAUGACAUGUACAAUCUUAUAUGACAUAAUUUAAAAUGAAAAUUUUAAAACGGUGCAUACCUUUUAAAAUUAAAACCUAAAAAUAAAAUAAAACCGAAAAAAAAAGUGAAUGAUAAUUUCUGUAAAAGCUUCGAAAACCUUAAACCAAGAUGUUUACAUCAUUUAUUUUUCUUUAGAAGUUUCAUUUUAAAUUAUGUCCUAUAAGAUCUGAUGUCUCAUUUAACAUUUAAAUUAAUGAUUUUAGUAACGAAAGUACCUUAUUGAUACAACAUCGAUAGUUUGAGGAUGUAAUGAGUAUGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).