ncRNA ID | gra-miR8721b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr5:56870471-56870850 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - CAUCGAUAGUUUGAGGAUGUA - 31 |
Stem-loop(if miRNA) |
AUGUUUUA        -                AA      U  AUCCUUCUAUC  UGAAACCGUUAAUUUUUUUCAUUAAAUGACAUGUACAAUCUUAUAUGACAUAAUUUAAAAUGAAAAUUUUAAAACGGUGCAUACCUUUUAAAAUUAAAACCUAAAAAUAAAAUAAAACCGAAAAAAAAAGUGAAUGA         AUUACAUC UCAAAUUAUCGAUGUU  AUCAAU AG           AU                                                                                                                                         U         |||||||| ||||||||||||||||  |||||| ||           ||         UAAUGUAG AGUUUGAUAGCUACAA  UAGUUA UC           UG                                                                                                                                         A UGUAUGAG        G                CA      U  ---------CA  AAAGCAAUGAUUUUAGUAAUUAAAUUUACAAUUUACUCUGUAGUCUAGAAUAUCCUGUAUUAAAUUUUACUUUGAAGAUUUCUUUUUAUUUACUACAUUUGUAGAACCAAAUUCCAAAAGCUUCGAAAAUGUCUUUA |
Stem-loop sequence | AUGUUUUAAUUACAUCUCAAAUUAUCGAUGUUAAAUCAAUUAGAUCCUUCUAUCAUUGAAACCGUUAAUUUUUUUCAUUAAAUGACAUGUACAAUCUUAUAUGACAUAAUUUAAAAUGAAAAUUUUAAAACGGUGCAUACCUUUUAAAAUUAAAACCUAAAAAUAAAAUAAAACCGAAAAAAAAAGUGAAUGAUAAUUUCUGUAAAAGCUUCGAAAACCUUAAACCAAGAUGUUUACAUCAUUUAUUUUUCUUUAGAAGUUUCAUUUUAAAUUAUGUCCUAUAAGAUCUGAUGUCUCAUUUAACAUUUAAAUUAAUGAUUUUAGUAACGAAAGUACCUUAUUGAUACAACAUCGAUAGUUUGAGGAUGUAAUGAGUAUGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |