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BaseInfo

ncRNA ID	novel_osa_miR13819
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:468008-468185 [-]
Reference genome	IRGSP-1.0
Source	SRR1609315
Length	21
Mature sequence(if miRNA)	1 - AACGUUGAACAUGAAUAGUGU - 21
Stem-loop(if miRNA)	--AA   C           C      UA C          -     -UU      --------------------AAAAU     AAAAAUUAAUCACAC     UAU CGUGUUUAGCG UUUGAC  U CGUCUUAUUU AAAAA   UUAUGA                         AUUAA               A     ||| ||||||||||| ||||||  | |||||||||| |||||   ||||||                         |||||               U     AUA GUACAAGUUGC AAACUG  A GCAGAAUAAA UUUUU   AAUACU                         UAUUU               A UGUG   A           -      GC A          C     UCU      AAUCAUAAAAAUAACAAUAAUCUAU     UAUACUUAUCAUGAA
Stem-loop sequence	AAUAUCCGUGUUUAGCGCUUUGACUAUCCGUCUUAUUUAAAAAUUUUAUGAAAAAUAUUAAAAAAAUUAAUCACACAUAAAGUACUAUUCAUAUUUUAUUAUCUAAUAACAAUAAAAAUACUAAUCAUAAUCUUUUUUCAAAUAAGACGAACGGUCAAACGUUGAACAUGAAUAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837669.1	ncRNA:21   UGUGAUAAGUACAAGUUGCAA   1   =|||||||||||||||||||| targets:201   GCACUAUUCAUGUUCAACGUU   221 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA010G19, full insert sequence	NA	coding protein	psRNATarget
AK288230.1	ncRNA:21   UGUGAUAAGUACAAGUUGCAA   1   =|||||||||*|||||||||| targets:5273   GCACUAUUCACGUUCAACGUU   5293 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence	NA	coding protein	psRNATarget
AK069810.1	ncRNA:21   UGUGAUAAGUACAAGUUGCAA   1   =||||=||||||||||||*|| targets:2665   GCACUGUUCAUGUUCAACUUU   2685 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023027G23, full insert sequence	NA	coding protein	psRNATarget
XM_015768706.1	ncRNA:21   UGUGAUAAGUACAAGUUGCAA   1   =||||=|||||||*||||||| targets:1223   GCACUGUUCAUGUCCAACGUU   1243 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X2, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768708.1	ncRNA:21   UGUGAUAAGUACAAGUUGCAA   1   =||||=|||||||*||||||| targets:1223   GCACUGUUCAUGUCCAACGUU   1243 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X4, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768705.1	ncRNA:21   UGUGAUAAGUACAAGUUGCAA   1   =||||=|||||||*||||||| targets:1223   GCACUGUUCAUGUCCAACGUU   1243 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X1, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768707.1	ncRNA:21   UGUGAUAAGUACAAGUUGCAA   1   =||||=|||||||*||||||| targets:1223   GCACUGUUCAUGUCCAACGUU   1243 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X3, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget