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BaseInfo

ncRNA ID	gra-miR482d
Species	Gossypium raimondii
Class	miRNA
Genome position	chr5:56339343-56339480 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	22
Mature sequence(if miRNA)	107 - UUUCCUAUGCCCCCCAUUCCAC - 128
Stem-loop(if miRNA)	A         UU     G     U   -          AUUUCUCU     CUUAUAUAUAUACACACA  CUGGAAAUU  UGGAA UGGGG GCG AGGAAAGAUC        UCUCU                  C  |||||||||  ||||| ||||| ||| ||||||||||        |||||                  A  GAUCUUUAG  ACCUU ACCCC CGU UCCUUUCUAG        AGAGA                  C -         UC     -     C   A          ACCAAACU     AACAUACACACACACACA
Stem-loop sequence	ACUGGAAAUUUUUGGAAGUGGGGUGCGAGGAAAGAUCAUUUCUCUUCUCUCUUAUAUAUAUACACACACACACACACACACACAUACAAAGAGAUCAAACCAGAUCUUUCCUAUGCCCCCCAUUCCACUGAUUUCUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012597537.1	ncRNA:22   CACCUUACCCCCCGUAUCCUUU   1   *|||*|||||||||||*||||| targets:646   UUGGCAUGGGGGGCAUCGGAAA   667 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii disease resistance protein RPP8-like (LOC105774984), transcript variant X1, mRNA	disease resistance protein RPP8-like(LOC105774984)	coding protein	psRNATarget
XM_012597539.1	ncRNA:22   CACCUUACCCCCCGUAUCCUUU   1   *|||*|||||||||||*||||| targets:673   UUGGCAUGGGGGGCAUCGGAAA   694 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii disease resistance protein RPP8-like (LOC105774984), transcript variant X2, mRNA	disease resistance protein RPP8-like(LOC105774984)	coding protein	psRNATarget
XM_012603870.1	ncRNA:22   CACCUUACCCCCCGUAUCC-UUU   1   |||||||||||||||||||-||| targets:862   GUGGAAUGGGGGGCAUAGGCAAA   884 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii probable disease resistance protein At5g63020 (LOC105779890), transcript variant X1, mRNA	probable disease resistance protein At5g63020(LOC105779890)	coding protein	psRNATarget
XM_012603876.1	ncRNA:22   CACCUUACCCCCCGUAUCC-UUU   1   |||||||||||||||||||-||| targets:884   GUGGAAUGGGGGGCAUAGGCAAA   906 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii probable disease resistance protein At5g63020 (LOC105779890), transcript variant X2, mRNA	probable disease resistance protein At5g63020(LOC105779890)	coding protein	psRNATarget
XM_012603896.1	ncRNA:22   CACCUUACCCCCCGUAUCC-UUU   1   |||||||||||||||||||-||| targets:863   GUGGAAUGGGGGGCAUAGGCAAA   885 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii probable disease resistance protein At5g63020 (LOC105779890), transcript variant X4, mRNA	probable disease resistance protein At5g63020(LOC105779890)	coding protein	psRNATarget
XM_012603885.1	ncRNA:22   CACCUUACCCCCCGUAUCC-UUU   1   |||||||||||||||||||-||| targets:863   GUGGAAUGGGGGGCAUAGGCAAA   885 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii probable disease resistance protein At5g63020 (LOC105779890), transcript variant X3, mRNA	probable disease resistance protein At5g63020(LOC105779890)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).