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BaseInfo

ncRNA ID gra-miR8783
Species Gossypium raimondii
Class miRNA
Genome position chr5:42120810-42121007 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UUUGUACGUGGCGGGAGAUAU - 31
Stem-loop(if miRNA) -           U    CG                        ---------C      C    --AAAC     UCUUAGAUAUUAGAAAAAUAAAAGACCGA
 AUUUGCUCCUU UGUA  UGGCGGGAGAUAUUGGAGGGAAAA          CAUUUU UUAC      GUAUC                             A
 ||||||||||| ||||  ||||||||||||||||||||||||          |||||| ||||      |||||                             U
 UAAACGAGGAA ACAU  ACCGCCCUCUAUAACCUCCCUUUU          GUAAAA AAUG      GGUUU                             U
A           U    AU                        UUUUAUAAUC      -    AAGCCG     AGGUGGUCAAAGAUUAUUAGAAUAGAAAU
Stem-loop sequence AUUUGCUCCUUUUGUACGUGGCGGGAGAUAUUGGAGGGAAAACCAUUUUCUUACAAACGUAUCUCUUAGAUAUUAGAAAAAUAAAAGACCGAAUUUAAAGAUAAGAUUAUUAGAAACUGGUGGAUUUGGGCCGAAGUAAAAAAUGCUAAUAUUUUUUUUCCCUCCAAUAUCUCCCGCCAUAUACAUAAGGAGCAAAUA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).