| ncRNA ID | gra-miR7494c |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr5:39574059-39574287 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - AUGGAGGAAAACAGAGGGAGAAGC - 34 |
| Stem-loop(if miRNA) |
AUA C UC U U U ----ACAA GCG CACUCGAAAAAA CUCUUCUGCUUCUCCCUUUGUUUUCCUCC UUCU AUUUCUUUUAAUGUAGUUUU CUA GUUU UCAUUUGUUAAAACUAGUUC GGUU U U ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||| |||||||||||||||||||| |||| | U GAGAAGACGAAGAGGGAGACAAAAGGAGG AAGA UAAAGAAAAUUGCGUUAAAA GAU CAAA GGUAAACAAUUUUGAUCAGG AAUA A A UAC U GA - U C GAUAUGAA --- AAAACUUGUUAA |
| Stem-loop sequence | AUACUCUUCUGCUUCUCCCUUUGUUUUCCUCCCUUCUUCAUUUCUUUUAAUGUAGUUUUUCUAUGUUUUUCAUUUGUUAAAACUAGUUCACAAGGUUGCGUCACUCGAAAAAAUUAAAUUGUUCAAAAAAUAAAAGUAUAGGGACUAGUUUUAACAAAUGGCAAACUUAGAAAAUUGCGUUAAAAGAAAUAGAGAAUGGAGGAAAACAGAGGGAGAAGCAGAAGAGCAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012617146.1 |
|
1.5 | PREDICTED: Gossypium raimondii uncharacterized LOC105789791 (LOC105789791), mRNA | uncharacterized LOC105789791(LOC105789791) | coding protein | psRNATarget | |||||||||
| XM_012628474.1 |
|
2.5 | PREDICTED: Gossypium raimondii uncharacterized LOC105798420 (LOC105798420), mRNA | uncharacterized LOC105798420(LOC105798420) | coding protein | psRNATarget | |||||||||
| XM_012604169.1 |
|
2.5 | PREDICTED: Gossypium raimondii probable receptor-like protein kinase At2g42960 (LOC105780061), mRNA | probable receptor-like protein kinase At2g42960(LOC105780061) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |