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BaseInfo

ncRNA ID	gra-miR8779
Species	Gossypium raimondii
Class	miRNA
Genome position	chr5:22159918-22160021 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	23
Mature sequence(if miRNA)	72 - UUUGAUCUAACGUACAGAGACUA - 94
Stem-loop(if miRNA)	A   A                  A      G   --GCGC      GUCCUU  AUG GCAAAUUAGUCUUUGUAC UUAGAU AAA      AAAUUU      U  ||| |||||||||||||||||| |||||| |||      ||||||      U  UAC CGUUUGAUCAGAGACAUG AAUCUA UUU      UUUGAA      C -   C                  C      G   AUUUAC      AAUUGU
Stem-loop sequence	AAUGAGCAAAUUAGUCUUUGUACAUUAGAUGAAAGCGCAAAUUUGUCCUUUUCUGUUAAAAGUUUCAUUUAUUUGAUCUAACGUACAGAGACUAGUUUGCCCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012602653.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   |||||||||||=||||||||||| targets:2180   UAGUCUCUGUAUGUUAGAUCAAA   2202 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget
XM_012602655.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   |||||||||||=||||||||||| targets:2178   UAGUCUCUGUAUGUUAGAUCAAA   2200 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X3, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget
XM_012602652.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   |||||||||||=||||||||||| targets:2119   UAGUCUCUGUAUGUUAGAUCAAA   2141 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget
XM_012628315.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   |||||||||||||||||||=||| targets:1100   UAGUCUCUGUACGUUAGAUUAAA   1122 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105798296 (LOC105798296), transcript variant X2, mRNA	uncharacterized LOC105798296(LOC105798296)	coding protein	psRNATarget
XM_012628317.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   |||||||||||||||||||=||| targets:1097   UAGUCUCUGUACGUUAGAUUAAA   1119 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105798296 (LOC105798296), transcript variant X3, mRNA	uncharacterized LOC105798296(LOC105798296)	coding protein	psRNATarget
XM_012594136.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   *|||||=||||=||||||||||| targets:4307   CAGUCUUUGUAUGUUAGAUCAAA   4329 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii disease resistance protein RGA2-like (LOC105772718), transcript variant X1, mRNA	disease resistance protein RGA2-like(LOC105772718)	coding protein	psRNATarget
XM_012625869.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   ||*|||*|||||*|||||||||| targets:1823   UAAUCUAUGUACAUUAGAUCAAA   1845 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105796268 (LOC105796268), transcript variant X4, mRNA	uncharacterized LOC105796268(LOC105796268)	coding protein	psRNATarget
XM_012600316.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   ||*||*|||||||||||||=||| targets:930   UAAUCACUGUACGUUAGAUUAAA   952 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105777200 (LOC105777200), transcript variant X1, mRNA	uncharacterized LOC105777200(LOC105777200)	coding protein	psRNATarget
XM_012600317.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   ||*||*|||||||||||||=||| targets:792   UAAUCACUGUACGUUAGAUUAAA   814 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105777200 (LOC105777200), transcript variant X2, mRNA	uncharacterized LOC105777200(LOC105777200)	coding protein	psRNATarget
XM_012628058.1	ncRNA:23   AUCAGAGACAUGCAAUCUAGUUU   1   ||||=*|*||||||||||||||| targets:2369   UAGUUCCCGUACGUUAGAUCAAA   2391 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g63330-like (LOC105798131), mRNA	pentatricopeptide repeat-containing protein At1g63330-like(LOC105798131)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).