| ncRNA ID | gra-miR8711 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr5:19980282-19980560 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 246 - AUACUACACUAAGGGCACUAGAUC - 269 |
| Stem-loop(if miRNA) |
UUAAA - -- C G CCCAAC U U - ---------GC GAUGAAGUAGAUGAGCCAUAGUUCACAUUACCAUACUCUCUAUAUGUUUCCCCAUUCUCUUAGCCACCAGAGUCUUGG CAAAAAUA CU ACACUAAGGG ACUA AU AG C CA CACAU AUU U |||||||| || |||||||||| |||| || || | || ||||| ||| GUUUUUAU GA UGUGGUUUCU UGGU UA UC G GU GUGUA CAG A GUUAC C UU U G ----CU U U U AUUAUCUUUCA UAUUCUCUCUGCUAUCUUUAACUAUCUUAUCACCUACAUCAGUUUUGAUGUAGACUCCUAUUGGAACAUAUAAACAAA |
| Stem-loop sequence | UUAAACAAAAAUACUACACUAAGGGCACUAGAUCCCAACAGUCUCACACAUGCAUUGAUGAAGUAGAUGAGCCAUAGUUCACAUUACCAUACUCUCUAUAUGUUUCCCCAUUCUCUUAGCCACCAGAGUCUUGGUAAAACAAAUAUACAAGGUUAUCCUCAGAUGUAGUUUUGACUACAUCCACUAUUCUAUCAAUUUCUAUCGUCUCUCUUAUGACACUUUCUAUUAAUGUGUUGUGUCUUCAUGUGGUUUCUUUGGUGUUUAGCUAUUUUUGCAUUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012602479.1 |
|
2.5 | PREDICTED: Gossypium raimondii vegetative incompatibility protein HET-E-1 (LOC105778723), transcript variant X2, mRNA | vegetative incompatibility protein HET-E-1(LOC105778723) | coding protein | psRNATarget | |||||||||
| XM_012602478.1 |
|
2.5 | PREDICTED: Gossypium raimondii vegetative incompatibility protein HET-E-1 (LOC105778723), transcript variant X1, mRNA | vegetative incompatibility protein HET-E-1(LOC105778723) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |