| ncRNA ID | gra-miR8732 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr5:18432907-18433256 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - GAAGAGUAUAGGGACUUAUGGCAU - 34 |
| Stem-loop(if miRNA) |
AGA A A AAAC G - C AU AUC C U -A GUUAAAUUUAGGUUCAUUACAACAUCAUUUUUUAGUUACAUUGCUACCAAGUUAGCA UUAAA UAUGCCAUAAGUCCUUAUAC CUUCAU UUG AAUUUAGUCC UAUA UUUUAUUUCUAGGAAUUUA UC UAC UUUCAAAUUUCAAA UUCAAGU UUUU C ||||| |||||||||||||||||||| |||||| ||| |||||||||| |||| ||||||||||||||||||| || ||| |||||||||||||| ||||||| |||| U AAUUU AUACGGUAUUCAGGGAUAUG GAAGUA AAC UUAAAUCAGG AUAU AAAAUAAGGGUCCUUAAAU GG AUG AAAGUUUAAAGUUU AAGUUUA UUAA U UAC A A -CUA A U A CU GAU A U GA UAAUUUUAACAUUUAAAAAAAACAAUUUAAAUAACCACACCGGAAAACUUUAUUAUU |
| Stem-loop sequence | AGAUUAAAAUAUGCCAUAAGUCCUUAUACACUUCAUAAACUUGGAAUUUAGUCCUAUACUUUUAUUUCUAGGAAUUUAAUUCAUCUACCUUUCAAAUUUCAAAUUUCAAGUAUUUUGUUAAAUUUAGGUUCAUUACAACAUCAUUUUUUAGUUACAUUGCUACCAAGUUAGCACUUUUAUUAUUUCAAAAGGCCACACCAAUAAAUUUAACAAAAAAAAUUUACAAUUUUAAUAAUUAGAUUUGAAUUUUGAAAUUUGAAAAGUAUAGGGUCUAAAUUCCUGGGAAUAAAAAUAUAUGGACUAAAUUACAAAUCAUGAAGAGUAUAGGGACUUAUGGCAUAAUUUAACAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012624917.1 |
|
0.0 | PREDICTED: Gossypium raimondii beta-galactosidase 5-like (LOC105795335), mRNA | beta-galactosidase 5-like(LOC105795335) | coding protein | psRNATarget | |||||||||
| XM_012597497.1 |
|
1.5 | PREDICTED: Gossypium raimondii serine/threonine-protein kinase HT1-like (LOC105774932), mRNA | serine/threonine-protein kinase HT1-like(LOC105774932) | coding protein | psRNATarget | |||||||||
| XM_012595027.1 |
|
2.5 | PREDICTED: Gossypium raimondii uncharacterized protein At4g06744-like (LOC105773275), mRNA | uncharacterized protein At4g06744-like(LOC105773275) | coding protein | psRNATarget | |||||||||
| XM_012618808.1 |
|
2.5 | PREDICTED: Gossypium raimondii uncharacterized LOC105790987 (LOC105790987), mRNA | hypothetical protein(LOC105790987) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |