ncRNA ID | gra-miR8705 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr5:15853753-15854164 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 380 - AGUUCAUACUAGUUCGUGGGUCA - 402 |
Stem-loop(if miRNA) |
AU       ------------  GUUCAUACUAGUUCGUGGGUCAAUUAGAUUUUUACCUCUCACUGAAUUGAUAACUUAUUUUGUUCUUAAUCCAAUCAGUCCAACCAGUUUAGAUAACAUUGAAUUUUGAUCUUUUUUAUAUUUUUAAAAUAUUUUUUCAAAGAAGUCUUUAUUUUUGGAUUUUAAAAUGUUCUUUUUUUUCAUAUUUU   GUUCAAC            CA                                                                                                                                                                                            U   |||||||            ||   UAAGUUG            AG                                                                                                                                                                                            A AU       AAUAAAAAAUCA  UCAGUCUAGUCAAGUAAAAUUAAGCGCACAGUUGGCUAAAAUUUUGAAAAUUUGAUAAAAUCAAGAAUUGUAAAUGUUAAAAAACAGUUAAACCAAAUAUGGGAAAUUUUUAUGCAUUAAAAAAUUUUAAUUUUUAAUAGUAAAAAGAAUAAAAUUUGUGUUUAUACAAAUUUUUAUAAAAAAUUUGC |
Stem-loop sequence | AUGUUCAACCAGUUCAUACUAGUUCGUGGGUCAAUUAGAUUUUUACCUCUCACUGAAUUGAUAACUUAUUUUGUUCUUAAUCCAAUCAGUCCAACCAGUUUAGAUAACAUUGAAUUUUGAUCUUUUUUAUAUUUUUAAAAUAUUUUUUCAAAGAAGUCUUUAUUUUUGGAUUUUAAAAUGUUCUUUUUUUUCAUAUUUUUACGUUUAAAAAAUAUUUUUAAACAUAUUUGUGUUUAAAAUAAGAAAAAUGAUAAUUUUUAAUUUUAAAAAAUUACGUAUUUUUAAAGGGUAUAAACCAAAUUGACAAAAAAUUGUAAAUGUUAAGAACUAAAAUAGUUUAAAAGUUUUAAAAUCGGUUGACACGCGAAUUAAAAUGAACUGAUCUGACUGAACUAAAAAAUAAGUUGAAUUA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |